View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_657 (Length: 220)
Name: NF10954A_low_657
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_657 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 11034566 - 11034777
Alignment:
| Q |
4 |
tgttgttgttgttgtgatcagcaccatcatcttcagcatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034566 |
tgttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacag |
11034665 |
T |
|
| Q |
104 |
agatttgccatagctaccaacatagaaagaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgagtattccatccgatttgga |
203 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11034666 |
agatttaccatagctaccaacatagaaagaattcacatcctgtgaatttgaagttctattcatacaattaccaatgtatgagtattccatccgatttgga |
11034765 |
T |
|
| Q |
204 |
caactcatatat |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11034766 |
caactcatatat |
11034777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 11009198 - 11009364
Alignment:
| Q |
49 |
aagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgccatagctaccaacatagaaagaattcacatcctgtga |
148 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||| ||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11009198 |
aagtgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacatagaaagaattcacatcctgtga |
11009297 |
T |
|
| Q |
149 |
gtgtgaagttctattcatacaattaccaatgtatgagtattccatccgatttggacaactcatatat |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |
|
|
| T |
11009298 |
atatgaagttctattcatacaattaccaatgtatgaatattccatccgattcggacagctcacatat |
11009364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 10975278 - 10975395
Alignment:
| Q |
93 |
aattccgacagagatttgccatagctaccaacatagaaagaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgagtattcca |
192 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||||| |||| | | ||||||| |||| ||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
10975278 |
aattccgaaagagatttgctgtagcgaccaacatagaaacgattcccgtgttgtgagtatgaaccactactcatacagttaccaacgtatgagtattccg |
10975377 |
T |
|
| Q |
193 |
tccgatttggacaactca |
210 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
10975378 |
tccaatttggacaactca |
10975395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University