View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_665 (Length: 219)
Name: NF10954A_low_665
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_665 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 4272061 - 4271884
Alignment:
| Q |
42 |
catagacactttgctgaaaaatcattgttggtggaactgttaagttgcaatagaaaattattcagcttaaacccaaatccaatccagattcagcttaatc |
141 |
Q |
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| T |
4272061 |
catagacactttgctgaaaaatcattgttggtggaactgttaagctgcaatagaaaactattcagcttaaacccaaatccaatccagattcagcttaatc |
4271962 |
T |
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| Q |
142 |
ccattgtctctttttctgaatctcgattaagtacaataatggtacgagttnnnnnnnctatacttggaggaaccaatt |
219 |
Q |
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| T |
4271961 |
ccattgtctctttttttgaatctcgattaagtacagcaatggtacgagttaaaaaaactatacttggaggaaccaatt |
4271884 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 12174103 - 12174143
Alignment:
| Q |
42 |
catagacactttgctgaaaaatcattgttggtggaactgtt |
82 |
Q |
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| T |
12174103 |
catagacactttgctgaaaattcattgctggtggaactgtt |
12174143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 12185615 - 12185655
Alignment:
| Q |
42 |
catagacactttgctgaaaaatcattgttggtggaactgtt |
82 |
Q |
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| T |
12185615 |
catagacactttgctgaaaattcattgctggtggaactgtt |
12185655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 12418531 - 12418571
Alignment:
| Q |
42 |
catagacactttgctgaaaaatcattgttggtggaactgtt |
82 |
Q |
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| T |
12418531 |
catagacactttgctgaaaattcattgctggtggaactgtt |
12418571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 12430043 - 12430083
Alignment:
| Q |
42 |
catagacactttgctgaaaaatcattgttggtggaactgtt |
82 |
Q |
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| T |
12430043 |
catagacactttgctgaaaattcattgctggtggaactgtt |
12430083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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