View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_668 (Length: 218)
Name: NF10954A_low_668
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_668 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 8772466 - 8772670
Alignment:
| Q |
14 |
aacagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
8772466 |
aacagagagaactttcccaattgagtcttaaattagctagccaaaaattataagacaataggaaactaaatatatcagcagccagattcaactagtttga |
8772565 |
T |
|
| Q |
114 |
gcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcatgacttgtgctaagaggccaacacaggaagttgatgattcaccac |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
8772566 |
gcagagtagaaacaagactgcgatgactgttgttgtccataaccagcaacattcatgacttgtgccaagagcccaacacaggaagttgatgattcaccac |
8772665 |
T |
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| Q |
214 |
catga |
218 |
Q |
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||||| |
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| T |
8772666 |
catga |
8772670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 7558238 - 7558034
Alignment:
| Q |
14 |
aacagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
7558238 |
aacagagagaactttcccaattgagtcttaaattagctagccaaaaattataagacaataggaaactaaatatatcagcagccagattcaactagtttga |
7558139 |
T |
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| Q |
114 |
gcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcatgacttgtgctaagaggccaacacaggaagttgatgattcaccac |
213 |
Q |
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| T |
7558138 |
gcagagtagaaacaagactgcgatgactgttgttgtccataaccagcaacattcatgacttgtgccaagagcccaacacaggaagttgatgattcaccac |
7558039 |
T |
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| Q |
214 |
catga |
218 |
Q |
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||||| |
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| T |
7558038 |
catga |
7558034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 19721965 - 19721761
Alignment:
| Q |
14 |
aacagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
113 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
19721965 |
aacagagagaacttttcctattgagtcttaaattagctagccaaaaattataagacaataggaaaataaatatatcagcagccagcttcaatcaaattga |
19721866 |
T |
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| Q |
114 |
gcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcatgacttgtgctaagaggccaacacaggaagttgatgattcaccac |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||| |
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| T |
19721865 |
gcagagtagaaacaagactgcgatgattgttgttgtccataaccagcaacattcatgatttatgccaagagcccaacacaggaagttgatgattcaccac |
19721766 |
T |
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| Q |
214 |
catga |
218 |
Q |
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||||| |
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| T |
19721765 |
catga |
19721761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 35808013 - 35808065
Alignment:
| Q |
61 |
ttataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
113 |
Q |
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|||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
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| T |
35808013 |
ttataagacaataggaaactaaatatatcagctgccaacttcaatcagtttga |
35808065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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