View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_67 (Length: 398)
Name: NF10954A_low_67
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_67 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Complemental strand, 183548 - 183171
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183548 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
183449 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183448 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
183349 |
T |
|
| Q |
212 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183348 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
183249 |
T |
|
| Q |
312 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183248 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
183171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 493968 - 494345
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
493968 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
494067 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494068 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
494167 |
T |
|
| Q |
212 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494168 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
494267 |
T |
|
| Q |
312 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
494268 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
494345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 18191629 - 18192007
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18191629 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
18191728 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaagggg-tagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191729 |
ggtgccccctgttttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccata |
18191828 |
T |
|
| Q |
211 |
ctcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18191829 |
ctcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtacagaatacctaggggcgcgagacaactc |
18191928 |
T |
|
| Q |
311 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191929 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
18192007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 16337426 - 16337348
Alignment:
| Q |
311 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16337426 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
16337348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 42247850 - 42247894
Alignment:
| Q |
316 |
aaggaactcggcaaaatagccccgtaacttcgggagaaggggtgc |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42247850 |
aaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgc |
42247894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 389
Target Start/End: Original strand, 34658967 - 34659344
Alignment:
| Q |
12 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658967 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
34659066 |
T |
|
| Q |
112 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659067 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatgccatac |
34659166 |
T |
|
| Q |
212 |
tcccaagaaaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659167 |
tcccaagaaaagctcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactct |
34659266 |
T |
|
| Q |
312 |
ctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659267 |
ctctaaggaacttggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
34659344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 8174936 - 8174997
Alignment:
| Q |
92 |
ttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
154 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8174936 |
ttatcggttcaagcacacaaggtg-cccttgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 47 - 389
Target Start/End: Original strand, 14404532 - 14404874
Alignment:
| Q |
47 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
|
| Q |
147 |
agaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
246 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
14404731 |
T |
|
| Q |
247 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404732 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
14404831 |
T |
|
| Q |
347 |
gggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404832 |
gggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
14404874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 45610235 - 45610202
Alignment:
| Q |
21 |
caggtgaatattcctgtactacctcttgttggtc |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45610235 |
caggtgaatattcctgtactacctcttgttggtc |
45610202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 55434 - 55512
Alignment:
| Q |
311 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
389 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55434 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccag |
55512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 7869347 - 7869276
Alignment:
| Q |
270 |
aggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgta |
341 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
7869347 |
aggtgggtaggtagagaatacctaggagtgtgagacaaccctctctaaggaactcgataaaatagacccgta |
7869276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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