View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_671 (Length: 218)
Name: NF10954A_low_671
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_671 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 13031195 - 13031013
Alignment:
| Q |
18 |
atcagtggtgtgagt-attataaaaagaatcttaggaccaactggatatctatttgataataggtcgacccaaagctttgaggaggattggagcatatac |
116 |
Q |
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| T |
13031195 |
atcagtggtgtgagtgattttaaaaagaatcttaggaccaactggatatctattggataataggtcgacccaaagctttgagaaggattggagcatatac |
13031096 |
T |
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| Q |
117 |
cagacaagtttacccaaaagacaaatattagtttctcaagttgttcagattcccaaaccaccttgatgttttgagcgtgcaat |
199 |
Q |
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| T |
13031095 |
cagacaagtttacccaaaagacaaatattagtttctctagttgttcagattcccaaaccaccttgatgctttgagcgtgcaat |
13031013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 33145337 - 33145448
Alignment:
| Q |
78 |
aggtcgacccaaagctttgaggaggattggagcatataccagacaagtttacccaaaagacaaata-ttagtttctcaagttgttcagattcccaaacca |
176 |
Q |
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| T |
33145337 |
aggtcgacccaaagatt-gaggaggattggagcatatcccagacaagtttactcaaaagaaaaatatttagtttctctagtcgttctaattcccaaacca |
33145435 |
T |
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| Q |
177 |
ccttgatgttttg |
189 |
Q |
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| T |
33145436 |
ccttgatgctttg |
33145448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 24132570 - 24132651
Alignment:
| Q |
102 |
gattggagcatataccagacaagtttacccaaaagacaaatattagtttctcaagttgttcagattcccaaaccaccttgat |
183 |
Q |
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| T |
24132570 |
gattgaagcaaatcccaaacaagtttgccaataagacaaatattagtttccctagctgttctgattcccaagccaccttgat |
24132651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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