View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_673 (Length: 217)

Name: NF10954A_low_673
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_673
NF10954A_low_673
[»] chr2 (11 HSPs)
chr2 (68-149)||(7542155-7542236)
chr2 (68-149)||(12245564-12245645)
chr2 (71-145)||(14703341-14703415)
chr2 (68-149)||(11999336-11999417)
chr2 (68-149)||(12234618-12234699)
chr2 (152-199)||(7542062-7542109)
chr2 (152-199)||(12234525-12234572)
chr2 (152-199)||(14703244-14703291)
chr2 (152-199)||(16662277-16662324)
chr2 (68-149)||(12258739-12258820)
chr2 (68-149)||(16657675-16657756)
[»] chr1 (2 HSPs)
chr1 (100-149)||(52549211-52549260)
chr1 (152-199)||(52549297-52549344)
[»] chr4 (2 HSPs)
chr4 (77-149)||(35132386-35132458)
chr4 (152-188)||(30775099-30775135)
[»] chr7 (3 HSPs)
chr7 (152-199)||(8616517-8616564)
chr7 (152-191)||(8659207-8659246)
chr7 (152-188)||(8585991-8586027)
[»] chr5 (1 HSPs)
chr5 (71-149)||(28219847-28219925)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 7542236 - 7542155
Alignment:
Q  68 ttgaggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    |||||||| ||||||||||||||| ||||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||||||    
T  7542236 ttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctt 7542155  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 12245564 - 12245645
Alignment:
Q  68 ttgaggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||| ||  ||||||| || |||||||| ||||||||||    
T  12245564 ttgaggagattgagaactgcttgtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattgaggtagattctt 12245645  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 14703415 - 14703341
Alignment:
Q  71 aggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagat 145  Q
    ||||| |||||||| |||||  ||||||| ||||||||||||||||||   ||||||||||||||||| ||||||    
T  14703415 aggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagat 14703341  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 11999417 - 11999336
Alignment:
Q  68 ttgaggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    |||||||| ||||||||||||||| ||||||| ||||||| ||| || ||  ||||||| || |||||||| ||||||||||    
T  11999417 ttgaggaggttgagaactgcttgtgagagggcaaaaagaatactatcatttcttgttgttgcaactattgaggtagattctt 11999336  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 12234699 - 12234618
Alignment:
Q  68 ttgaggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    |||||||| || |||||||||||| ||||||| |||||| || | |||||| ||||||| || || ||||| ||||||||||    
T  12234699 ttgaggaggttaagaactgcttgtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattgaggtagattctt 12234618  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 7542109 - 7542062
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 199  Q
    ||||||| ||||||||||| |||||||| |||||||||| ||||||||    
T  7542109 ttgaggagatgaatatggatctttttaacgagtgtatgacgattgttg 7542062  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 12234572 - 12234525
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 199  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||||    
T  12234572 ttgaggaaatgaatatggatcttcttattgagtgtatgaagattgttg 12234525  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 14703291 - 14703244
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 199  Q
    |||| ||||||||||||||| ||||||| |||||| ||||||||||||    
T  14703291 ttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgttg 14703244  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 16662277 - 16662324
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 199  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  16662277 ttgaagaaatcaatatgggcctttttaacgagtgtatgaagattgttg 16662324  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 12258739 - 12258820
Alignment:
Q  68 ttgaggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    ||||||||||||| ||| |||||| |||| || |||||| |||||||||   ||||||| || ||||||||  |||||||||    
T  12258739 ttgaggagattgaaaacagcttgtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctt 12258820  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 16657675 - 16657756
Alignment:
Q  68 ttgaggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    |||||||| ||||||||||| ||| ||||||| || || ||||| ||||| | | ||||| ||||| |||| ||||||||||    
T  16657675 ttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctt 16657756  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 52549211 - 52549260
Alignment:
Q  100 caaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549211 caaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 52549260  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 52549297 - 52549344
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549297 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 52549344  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 35132458 - 35132386
Alignment:
Q  77 ttgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    ||||||||||| ||  ||||||| || ||| ||||||||||| ||||||| |||| |||||||||||||||||    
T  35132458 ttgagaactgcctgctagagggcaaagagatcactttctttccttgttgttgccaatattgaagtagattctt 35132386  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 30775135 - 30775099
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtat 188  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  30775135 ttgaggaaatcaatatggacctttttaatgagtgtat 30775099  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 8616564 - 8616517
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttg 199  Q
    |||||||||| ||||||||||||||||| |||||||| |||| |||||    
T  8616564 ttgaggaaatcaatatggacctttttaacgagtgtataaagactgttg 8616517  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 8659246 - 8659207
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtatgaa 191  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  8659246 ttgaggaaatgaatatggatctttttaatgagtgtatgaa 8659207  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 8585991 - 8586027
Alignment:
Q  152 ttgaggaaatgaatatggacctttttaaggagtgtat 188  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  8585991 ttgaggaaatcaatatggacctttttaatgagtgtat 8586027  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 28219925 - 28219847
Alignment:
Q  71 aggagattgagaactgcttgtaagagggccaaaagaacactttctttcgttgttgtcgccactattgaagtagattctt 149  Q
    ||||| |||||||| || || ||||| || ||||| ||||| ||||| | |||||||||||| ||||| ||||||||||    
T  28219925 aggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgaggtagattctt 28219847  T

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