View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_678 (Length: 216)
Name: NF10954A_low_678
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_678 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 34041118 - 34040933
Alignment:
| Q |
8 |
gagatggacatcatccgagttgctcagaactacacccaaatctgcttgcgacctcccacagacctgccttactgaaagtgctatacattgactccctttt |
107 |
Q |
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| T |
34041118 |
gagatagacataatccgagttgctcagaactacacccaaatctgcttgcaacctcccacagacctgccttactgaaagtgctatacattgacttcctttt |
34041019 |
T |
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| Q |
108 |
tggccttctgtactgtccttcatcaacaccagcttcacctggtggaagatgcaagttgaacttggagtcaacatcgtcaacctccctct |
196 |
Q |
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| T |
34041018 |
tggccttttgtactgtc---catcaacaccagcttcacctggtggaaaatgtaagttgaacttggagtcaacatcgtcaacctccctct |
34040933 |
T |
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Target: chr7; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 34585848 - 34586036
Alignment:
| Q |
8 |
gagatggacatcatccgagttgctcagaactacacccaaatctgcttgcgacctcccacagacctgccttactgaaagtgctatacattgactccctttt |
107 |
Q |
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||||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||| |||||| |
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| T |
34585848 |
gagatagacataatccgagttgctcagaactacacccaaacctgcttgcaacctcccacaggcccgccttactgaaagtgctatacattgacttcctttt |
34585947 |
T |
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| Q |
108 |
tggccttctgtactgtccttcatcaacaccagcttcacctggtggaagatgcaagttgaacttggagtcaacatcgtcaacctccctct |
196 |
Q |
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| T |
34585948 |
cggccttttgtactgtccttcatcaacaccagcttcaccaggtgggaaatgtacattgaacttggaatcaacatcgtcaacctccctct |
34586036 |
T |
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