View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_683 (Length: 214)
Name: NF10954A_low_683
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_683 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 7934497 - 7934679
Alignment:
| Q |
15 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcgttattctttca |
114 |
Q |
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| T |
7934497 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttca |
7934596 |
T |
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| Q |
115 |
ttccattgttacaatatgtgtcatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgcttct |
197 |
Q |
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| T |
7934597 |
ttccattgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttct |
7934679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 7934640 - 7934680
Alignment:
| Q |
118 |
cattgttacaatatgtgtcatagacgagttctttgtttctc |
158 |
Q |
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| T |
7934640 |
cattgttacaatatgtgccatagacgagttctttgtttctc |
7934680 |
T |
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