View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_685 (Length: 214)
Name: NF10954A_low_685
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_685 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 25950241 - 25950422
Alignment:
| Q |
33 |
tcccattcttccaaccttctcttcccaaacagaaagcaaccaaacacttccaaagccaatggcattcttcccgtaagagacacaatttgctttgaaaaac |
132 |
Q |
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| T |
25950241 |
tcccattcgtccacccttctcttaccaaacagaaagcaaccaaacacttccaaagccaatggcattcttcccgtaagagacacaatttgctttgaaaaac |
25950340 |
T |
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| Q |
133 |
tcagaaagtctggtggaggatcctttttccttaatgcatggtaactgcataactctagagcttcttcaggatacaattctgt |
214 |
Q |
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| T |
25950341 |
tcagaaagtctggtggaggatcctttttcctcaatgcatggtaactgaataactctagagcttcttcagcatacaattctgt |
25950422 |
T |
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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 25959518 - 25959608
Alignment:
| Q |
29 |
atcttcccattcttccaaccttctcttcccaaacagaaagcaaccaaacacttccaaagccaatggcattcttcccgtaagagacacaatt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25959518 |
atcttcccattcttccaaccttctcttcccaaacagaaagcaaccaaacacttccaaagccaatggcattcttcccgtaagagacacaatt |
25959608 |
T |
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