View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_689 (Length: 213)
Name: NF10954A_low_689
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_689 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 2888287 - 2888461
Alignment:
| Q |
20 |
aatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagagttaagtcagcttttctttccaactca |
119 |
Q |
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| T |
2888287 |
aatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagagttaagtcagcttttctttccaactcg |
2888386 |
T |
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| Q |
120 |
agttctaacctcttttgttgatttccagctcaaatagacaagacctgtttaatgccctcggttcgatgtatactg |
194 |
Q |
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| T |
2888387 |
agttctaacctcttttgttcatttccagctcaaagagacaagacctgtttaatgccctcggttcgatgtatactg |
2888461 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 2896067 - 2895912
Alignment:
| Q |
33 |
cttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagagttaagtcagcttttctttccaactcaagttctaacctct |
132 |
Q |
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| T |
2896067 |
cttggaaggaaatagtaagtgaaacttcattatgtgaaaaataagaaata-----ttatagtta-gtccgattttctttccaacttgaatgttaacttct |
2895974 |
T |
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| Q |
133 |
tttgttgatttccagctcaaatagacaagacctgtttaatgccctcggttcgatgtatactg |
194 |
Q |
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| T |
2895973 |
tttgttgatttccagctcaaatagacaagatctgtttaatgccctcggttcgatgtatactg |
2895912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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