View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_692 (Length: 213)
Name: NF10954A_low_692
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_692 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 36140278 - 36140191
Alignment:
| Q |
116 |
aatcatataatttctagatactgggcaaaatcgaatacataatttgtgacctatggtactaaaacagcttatatatattgttcgagat |
203 |
Q |
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| T |
36140278 |
aatcatataatttctagatactgggcaaaatcgaatacataatttgtgacctatggtactaaaacagcttatatatgttgttggagat |
36140191 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 36140380 - 36140315
Alignment:
| Q |
14 |
gacatcatctacaactggaacaatgtagagacacaagctcctcgactatcatacatacgtctagaa |
79 |
Q |
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| T |
36140380 |
gacatcatctacaactagaacaatgtagagacacaagctcctcaactatcatacatacgtctagaa |
36140315 |
T |
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