View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_695 (Length: 212)

Name: NF10954A_low_695
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_695
NF10954A_low_695
[»] chr4 (17 HSPs)
chr4 (13-193)||(29123429-29123611)
chr4 (13-193)||(22340629-22340810)
chr4 (13-193)||(4303193-4303374)
chr4 (13-190)||(17826772-17826950)
chr4 (24-193)||(18116384-18116554)
chr4 (24-194)||(36279205-36279376)
chr4 (19-193)||(8110968-8111143)
chr4 (24-193)||(23158152-23158322)
chr4 (24-156)||(51872772-51872905)
chr4 (11-193)||(12915841-12916024)
chr4 (13-193)||(3621552-3621733)
chr4 (95-193)||(15705634-15705732)
chr4 (21-156)||(15649066-15649202)
chr4 (45-120)||(50693778-50693853)
chr4 (45-120)||(17469148-17469223)
chr4 (45-120)||(36951324-36951399)
chr4 (55-126)||(24059760-24059831)
[»] chr1 (8 HSPs)
chr1 (13-193)||(49369817-49369998)
chr1 (24-193)||(41342810-41342980)
chr1 (24-193)||(27030002-27030172)
chr1 (24-193)||(10003981-10004151)
chr1 (55-144)||(24545091-24545180)
chr1 (76-120)||(37668976-37669020)
chr1 (15-123)||(28520830-28520939)
chr1 (56-123)||(26996083-26996150)
[»] scaffold0032 (1 HSPs)
scaffold0032 (13-193)||(58387-58568)
[»] chr3 (14 HSPs)
chr3 (13-193)||(8595307-8595488)
chr3 (21-193)||(23603313-23603485)
chr3 (13-193)||(42462770-42462951)
chr3 (24-193)||(23571623-23571793)
chr3 (13-193)||(48547604-48547785)
chr3 (24-193)||(3514734-3514904)
chr3 (24-193)||(9819110-9819280)
chr3 (21-156)||(17153806-17153942)
chr3 (13-187)||(42459294-42459469)
chr3 (45-120)||(16664099-16664174)
chr3 (47-120)||(39632858-39632931)
chr3 (68-156)||(53152132-53152220)
chr3 (45-120)||(52196409-52196484)
chr3 (56-120)||(10754186-10754250)
[»] scaffold0041 (1 HSPs)
scaffold0041 (24-193)||(74348-74518)
[»] chr7 (17 HSPs)
chr7 (24-193)||(40891766-40891936)
chr7 (24-193)||(586834-587004)
chr7 (21-156)||(37075589-37075725)
chr7 (24-193)||(12121636-12121806)
chr7 (24-193)||(24819747-24819917)
chr7 (36-193)||(36575396-36575554)
chr7 (21-156)||(34981934-34982070)
chr7 (21-193)||(9403131-9403297)
chr7 (13-193)||(20705483-20705664)
chr7 (13-193)||(20873527-20873708)
chr7 (45-123)||(27869020-27869098)
chr7 (45-123)||(27987591-27987669)
chr7 (45-120)||(22865772-22865847)
chr7 (45-120)||(47548969-47549044)
chr7 (45-120)||(47553412-47553487)
chr7 (45-144)||(18815417-18815516)
chr7 (50-123)||(8457213-8457286)
[»] chr5 (9 HSPs)
chr5 (13-193)||(11266075-11266256)
chr5 (19-193)||(27891748-27891923)
chr5 (25-193)||(5824972-5825141)
chr5 (21-156)||(6678577-6678711)
chr5 (45-189)||(29150359-29150502)
chr5 (45-120)||(29322916-29322991)
chr5 (45-123)||(31962696-31962774)
chr5 (45-120)||(8896369-8896444)
chr5 (45-120)||(38931892-38931967)
[»] chr2 (9 HSPs)
chr2 (32-193)||(38938522-38938684)
chr2 (21-156)||(23384930-23385066)
chr2 (24-193)||(30275939-30276109)
chr2 (21-193)||(32349924-32350097)
chr2 (25-193)||(21963458-21963627)
chr2 (25-193)||(21964643-21964812)
chr2 (80-156)||(27914660-27914736)
chr2 (45-120)||(1258584-1258659)
chr2 (45-148)||(22300858-22300961)
[»] chr6 (8 HSPs)
chr6 (13-173)||(667335-667496)
chr6 (24-153)||(2894327-2894457)
chr6 (24-193)||(18295398-18295568)
chr6 (13-193)||(28604878-28605059)
chr6 (45-193)||(7218374-7218522)
chr6 (24-148)||(17228031-17228156)
chr6 (45-120)||(5391541-5391616)
chr6 (96-145)||(9759578-9759627)
[»] chr8 (5 HSPs)
chr8 (19-193)||(31423238-31423413)
chr8 (24-193)||(26077728-26077898)
chr8 (45-193)||(29532407-29532555)
chr8 (45-192)||(26390266-26390413)
chr8 (45-120)||(10801704-10801779)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-193)||(224750-224898)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 29123429 - 29123611
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggtt-cccttaaaagctaacatttttgtttggcgtctctttctgaatagac 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  29123429 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagac 29123528  T
Q  111 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29123529 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 29123611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 22340810 - 22340629
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  22340810 tggacatcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagact 22340711  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22340710 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggag 22340629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 4303193 - 4303374
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  4303193 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagact 4303292  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4303293 tgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggag 4303374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 17826772 - 17826950
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  17826772 tggacatcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagact 17826871  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggag 190  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17826872 tgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 18116384 - 18116554
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18116384 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 18116483  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| |||||||||||||||    
T  18116484 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggag 18116554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 36279205 - 36279376
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||    
T  36279205 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 36279304  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaga 194  Q
    | || ||||| ||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||    
T  36279305 ataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaga 36279376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 8111143 - 8110968
Alignment:
Q  19 tcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctac 117  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||| | ||| |||||||| |||||||||||||||||||||||||| ||    
T  8111143 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaac 8111044  T
Q  118 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||||||||| ||||||||||| ||| || ||| | |  ||   ||||| ||||||||||||||||||||||||    
T  8111043 aaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggag 8110968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 23158152 - 23158322
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||| | ||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23158152 atcactgcatattttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 23158251  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || |||||||||||||||    
T  23158252 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggag 23158322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 51872905 - 51872772
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| |||| |||||||| ||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  51872905 atcactgcagattttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 51872806  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctac 156  Q
    | || ||||||||||||||||| ||| |||||||    
T  51872805 ataatcttcgcaagaggaatgttcttgaggctac 51872772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 12916024 - 12915841
Alignment:
Q  11 gatggacatcaatatcactgcagagtttgatcaatt-ttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaataga 109  Q
    |||||||| ||| ||||||| ||| ||| | ||||| || |||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  12916024 gatggacaccaagatcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaataga 12915925  T
Q  110 cttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
     ||||||||||| ||||| | ||||| ||||||||||||  |||||   ||  |||||||||||||||||||||||||||||||    
T  12915924 attgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggag 12915841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 3621733 - 3621552
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||| |||| || ||||| | ||| |||||||| |||||||| ||||||||||||||    
T  3621733 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 3621634  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||| |||||||||||||| || |||||||| || ||| ||| | |  ||   ||||| ||| ||||||||||||||||||||    
T  3621633 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggag 3621552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 15705634 - 15705732
Alignment:
Q  95 ctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggag 15705732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 15649066 - 15649202
Alignment:
Q  21 aatatcactgcagagtttgatcaatt-ttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    ||||||| ||||||||||||||| || |||||||||||||| || || ||||| | ||| |||||||||||| | |||||||||||| | ||||||||||    
T  15649066 aatatcaatgcagagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 15649165  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    |||| || ||||||||| ||||||||||  |||||||    
T  15649166 aggataatcttcgcaagcggaatgtcctcgaggctac 15649202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 50693778 - 50693853
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  50693778 ttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 17469148 - 17469223
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||| || || | ||||||||||||||||| |||||||||||||||||||||||||||    
T  17469148 ttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 36951399 - 36951324
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||| || || | |||||||||||| ||||||||||||||||||||||||||||||||    
T  36951399 ttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 24059831 - 24059760
Alignment:
Q  55 taaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 126  Q
    |||| ||||| | ||||||| ||| ||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaa 24059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 49369998 - 49369817
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  49369998 tggacaccaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagact 49369899  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  49369898 tgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggag 49369817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 41342810 - 41342980
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  41342810 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 41342909  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| |||||||||||||||    
T  41342910 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggag 41342980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 27030172 - 27030002
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||| || ||| ||||||||||||||| |||||    
T  27030172 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaagg 27030073  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  ||  | |||||||||||||||    
T  27030072 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggag 27030002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 10004151 - 10003981
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||  || ||||||| |||||| ||||||||||||||||||||||||||||    
T  10004151 atcactgcagattttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaagg 10004052  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||| |||| ||||||| || |||||||  ||  ||||||||  ||  | |||||||||||||||    
T  10004051 ataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggag 10003981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  55 taaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    ||||| |||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 37669020 - 37668976
Alignment:
Q  76 taacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  37669020 taacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 28520830 - 28520939
Alignment:
Q  15 gacatcaatatcactgcagagtttgatcaatttta-tggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttg 113  Q
    ||||| || |||| || ||||||| |||||||||  ||||||||||||||| | ||||| |  || || ||||| ||||||||||| |||||||||||||    
T  28520830 gacattaacatcattgaagagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttg 28520929  T
Q  114 ctacaaagga 123  Q
    ||||| ||||    
T  28520930 ctacagagga 28520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  56 aaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 58387 - 58568
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  58387 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 58486  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||    
T  58487 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggag 58568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 8595488 - 8595307
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaattt-tatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  8595488 tggacatcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagact 8595389  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  8595388 tgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggag 8595307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 23603485 - 23603313
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |    
T  23603485 aatatcattgcggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctacta 23603386  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  23603385 aggacaaccttcgcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggag 23603313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 42462951 - 42462770
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||||||| || |||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  42462951 tggacatcaacattactgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagact 42462852  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||| || ||||||||||    
T  42462851 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggag 42462770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 23571623 - 23571793
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||    
T  23571623 atcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaagg 23571722  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| |||||||||| |||||||||| |||||||  ||  ||||||||  || || |||||||||||||||    
T  23571723 acaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggag 23571793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 48547785 - 48547604
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||| |||| ||||||||||||||| ||||||||| |||||||||||| ||||| ||||| | ||| |||||||| |||||||||||||||||||||||    
T  48547785 tggacttcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagact 48547686  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||| |||||||||||||| ||||||||||| |||||| ||| | |  ||  |||||| ||||||||||||||||||||||||    
T  48547685 tgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggag 48547604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 3514904 - 3514734
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||    
T  3514904 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 3514805  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||||||||||||||| ||| ||||||   ||  ||||||||  || || |||||||||||||||    
T  3514804 ataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggag 3514734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 9819280 - 9819110
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||  || |||| ||||||||| || |||||||||||||||||||||||||    
T  9819280 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaagg 9819181  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  || || |||||||||||||||    
T  9819180 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggag 9819110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 17153806 - 17153942
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||| ||||||| |||||| ||||||||||||||||||    
T  17153806 aatatcaatgcagagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaa 17153905  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    |||| || ||||||||||||||||||||  |||||||    
T  17153906 aggataatcttcgcaagaggaatgtcctcgaggctac 17153942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 42459294 - 42459469
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatt-ttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||| ||| ||||||| ||| ||| | ||||| ||||||||||| | |||||| ||||| | ||||||||||||||| ||||| |||||||||||| |    
T  42459294 tggacaacaacatcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaat 42459393  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatact-tcttgtgcggccttgtgtggtaag 187  Q
    |||||||||||||||| | | ||| |||||||||||| |||||| | | | | ||||||||| ||||||||||||||    
T  42459394 tgctacaaaggacaacttgcacaaaaggaatgtccttgaggcta-acaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 16664174 - 16664099
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  16664174 ttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 16664099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 39632858 - 39632931
Alignment:
Q  47 ttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||| | ||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 39632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 53152132 - 53152220
Alignment:
Q  68 ttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    ||||||| ||| |||||||||||| | ||||||| |||| |||||||||||||||| || ||||||||||||||||||||  |||||||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctac 53152220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 52196484 - 52196409
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||    
T  52196484 ttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  56 aaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    ||||||||||| || || | |||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 74518 - 74348
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  74518 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 74419  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||    
T  74418 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggag 74348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 40891766 - 40891936
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40891766 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 40891865  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||    
T  40891866 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggag 40891936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 587004 - 586834
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  587004 atcactgcagagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaagg 586905  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| ||||| || |||||||||||| |||||||  ||  |||  ||| |||||| |||||||||||||||    
T  586904 acaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggag 586834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 37075589 - 37075725
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||| | ||||||| |||| ||||||||||||    
T  37075589 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaa 37075688  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    |||| || ||||||||||||||||||||  |||||||    
T  37075689 aggataatcttcgcaagaggaatgtcctcgaggctac 37075725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 12121806 - 12121636
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||| | ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12121806 atcactgcaaattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 12121707  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || |||||||||||||||    
T  12121706 ataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggag 12121636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 24819917 - 24819747
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||| || |||||||||||||||||||||||||    
T  24819917 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaagg 24819818  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||| |||||||| |||||| |||||||  |   ||||||||  || || |||||||||||||||    
T  24819817 ataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggag 24819747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 36575396 - 36575554
Alignment:
Q  36 tttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgca 134  Q
    ||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||| || |||||||||||||||||||||||||| || ||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  135 agaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||||||||||| |||||||  ||  ||||||||  ||  | |||||||||||||||    
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggag 36575554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 34982070 - 34981934
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||| || ||||| | ||| |||||||||||| | |||||||||||| | ||||||||||    
T  34982070 aatatcaatgcagagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 34981971  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    |||| || ||||||||||||||||||||  |||||||    
T  34981970 aggataatcttcgcaagaggaatgtcctcgaggctac 34981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 9403131 - 9403297
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||         |||||| ||||||||||||    
T  9403131 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttgg-------acctgaatcgacttgctacaa 9403223  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||    
T  9403224 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggag 9403297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 20705483 - 20705664
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||| | || || || || | ||| |||||||| |||||||| ||||||||||||||    
T  20705483 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20705582  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||| |||||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| ||||||||||||||||||    
T  20705583 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggag 20705664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 20873527 - 20873708
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||| | || || || || | ||| |||||||| |||||||| ||||||||||||||    
T  20873527 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20873626  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||| |||||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| ||||||||||||||||||    
T  20873627 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggag 20873708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 27869098 - 27869020
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||||||||| |||||||||   ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  27869098 ttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 27987591 - 27987669
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||| |||| |||||||||||| ||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27987591 ttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaagga 27987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 22865772 - 22865847
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||| ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  22865772 ttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 47549044 - 47548969
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||| ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  47549044 ttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 47553487 - 47553412
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||| ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  47553487 ttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 18815417 - 18815516
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    |||| |||| |||||||||||| ||||| | ||| || ||||| | ||||||||||||||||||||||||||||||||| || ||  | |||||||||||    
T  18815417 ttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagaggaatgt 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 8457213 - 8457286
Alignment:
Q  50 tggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||| |||||||||| | ||||| | ||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaagga 8457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 11266256 - 11266075
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||| ||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||    
T  11266256 tggacaacaacatcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagact 11266157  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||  |||||| ||||||||||||||||||||||||    
T  11266156 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggag 11266075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 27891923 - 27891748
Alignment:
Q  19 tcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctac 117  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||| | ||| |||||||| |||| ||||||||||||||||||||| ||    
T  27891923 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaac 27891824  T
Q  118 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||||||||| ||||||||||| |||||||||| | |  ||   ||||| ||||||||||||||||||||||||    
T  27891823 aaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggag 27891748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 5824972 - 5825141
Alignment:
Q  25 tcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||| ||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  5824972 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 5825071  T
Q  124 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||    
T  5825072 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggag 5825141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 6678577 - 6678711
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| ||||||||||||    
T  6678577 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaa 6678674  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    |||| || ||||||||||||||||||||  |||||||    
T  6678675 aggataatcttcgcaagaggaatgtcctcgaggctac 6678711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 29150502 - 29150359
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    ||||||||||||| |||||||| ||||| | ||| |||||||||||| |||| || ||||||||||||||||||||||||||| | ||||| ||||||||    
T  29150502 ttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaatgt 29150403  T
Q  145 ccttcaggctacagatacttcttgtgcggccttgtgtggtaagga 189  Q
    || | ||||||   ||   |||||||||||||| |||||||||||    
T  29150402 cc-tgaggctaacaatgtatcttgtgcggccttctgtggtaagga 29150359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 29322991 - 29322916
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||| ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  29322991 ttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 31962696 - 31962774
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||||||||| |||| |||||| ||||| | |||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  31962696 ttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaagga 31962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 8896444 - 8896369
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||  || || | ||||||  |||||||||||||||||||||||||||||||||||||    
T  8896444 ttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 38931967 - 38931892
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | |||||||||||  | || | |||||| |||||||||| |||||||||||||||||||||||||||    
T  38931967 ttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 38938684 - 38938522
Alignment:
Q  32 agagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaacctt 130  Q
    |||||||||||| |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38938684 agagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaatctt 38938585  T
Q  131 cgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||    
T  38938584 cgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggag 38938522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 23385066 - 23384930
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||| ||||||||    
T  23385066 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaa 23384967  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    |||| || ||||||||||||||||||||  |||||||    
T  23384966 aggataatcttcgcaagaggaatgtcctcgaggctac 23384930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 30276109 - 30275939
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||| ||||||||||    
T  30276109 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaagg 30276010  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || |||||||||||||||    
T  30276009 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggag 30275939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 32350097 - 32349924
Alignment:
Q  21 aatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaa 119  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||| | | |||||||||||||||||||||||||    
T  32350097 aatatcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaa 32349998  T
Q  120 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| |  ||||||||||||||||| ||| |||||||  ||  ||||||||  || || |||||||||||||||    
T  32349997 aggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggag 32349924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 21963627 - 21963458
Alignment:
Q  25 tcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||| ||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21963627 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21963528  T
Q  124 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||    
T  21963527 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggag 21963458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 21964812 - 21964643
Alignment:
Q  25 tcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 123  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||| ||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21964812 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21964713  T
Q  124 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||    
T  21964712 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggag 21964643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 27914660 - 27914736
Alignment:
Q  80 atttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctac 156  Q
    ||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||||||||||||||  |||||||    
T  27914660 atttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctac 27914736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 1258659 - 1258584
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||||||| || || | |||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258659 ttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 22300961 - 22300858
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    |||||||| | |||| |||||| || || | |||||| |||||  | ||||||||||||||||||| |||||||||||| ||  | ||||| || |||||    
T  22300961 ttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaagaaatgt 22300862  T
Q  145 cctt 148  Q
    ||||    
T  22300861 cctt 22300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 667496 - 667335
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  667496 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 667397  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcgg 173  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||||    
T  667396 tgctacaaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgcgg 667335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 2894457 - 2894327
Alignment:
Q  24 atcactgcagagtttgatcaattt-tatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||    
T  2894457 atcactgcagattttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaagg 2894358  T
Q  123 acaaccttcgcaagaggaatgtccttcaggc 153  Q
    | || ||||| ||||||||| ||||| ||||    
T  2894357 ataatcttcgtaagaggaatatccttgaggc 2894327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 18295398 - 18295568
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||| | ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  18295398 atcactgcatattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 18295497  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || |||||||||||||||    
T  18295498 ataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggag 18295568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 28604878 - 28605059
Alignment:
Q  13 tggacatcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagact 111  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||| |||| || ||||| | ||| |||||||| |||||||| ||||||||||||||    
T  28604878 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 28604977  T
Q  112 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    ||| |||||||||||||| || |||||||| || ||| ||| | |  ||   ||||| ||||||||||||||||||||||||    
T  28604978 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggag 28605059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 7218374 - 7218522
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    ||||||||||||| |||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| ||  | || || ||||||||    
T  7218374 ttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaaggaatgt 7218473  T
Q  145 ccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    | || ||||||   ||   | ||||||||||||||||||||||||||||    
T  7218474 ctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggag 7218522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 17228156 - 17228031
Alignment:
Q  24 atcactgcagagtttgatcaatttta-tggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||| ||||||| |||| ||||  ||||||||||| ||||| ||||| |  ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  17228156 atcactgaagagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaagg 17228057  T
Q  123 acaaccttcgcaagaggaatgtcctt 148  Q
    ||||  | ||||| ||||||||||||    
T  17228056 acaatttgcgcaaaaggaatgtcctt 17228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 5391541 - 5391616
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||||| ||| || || | ||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391541 ttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 9759578 - 9759627
Alignment:
Q  96 tctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtc 145  Q
    |||||| ||||||||||||||||||||| || || ||||| |||||||||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtc 9759627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 31423238 - 31423413
Alignment:
Q  19 tcaatatcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctac 117  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||||||||| ||    
T  31423238 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaac 31423337  T
Q  118 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| ||||||||||||||||||| |||||| | | |||  ||  |||||| ||||||||||||||||||||||||    
T  31423338 aaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggag 31423413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 26077728 - 26077898
Alignment:
Q  24 atcactgcagagtttgatcaatttt-atggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 122  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26077728 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 26077827  T
Q  123 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| |||||||| |||||||| ||| |||||||  ||  ||||||||  || || |||||||||||||||    
T  26077828 acaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggag 26077898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 29532555 - 29532407
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    ||||||||||||||||||| || ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||  |  |||| ||||||||    
T  29532555 ttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaaggaatgt 29532456  T
Q  145 ccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||||  ||||   |||  ||||||| ||||||||||| ||||||||||    
T  29532455 ccttccagctaataatatatcttgtgtggccttgtgtgataaggaggag 29532407  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 26390266 - 26390413
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    ||||||||||||  ||||| || ||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||||||  |  |||  ||||||||    
T  26390266 ttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataaggaatgt 26390365  T
Q  145 ccttcaggctacagatacttcttgtgcggccttgtgtggtaaggagga 192  Q
    ||||| |||||   |||  |||| |  |||||||||||||||||||||    
T  26390366 ccttccggctaataatatgtcttatatggccttgtgtggtaaggagga 26390413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 10801704 - 10801779
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaa 120  Q
    |||||||| | ||||| ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||    
T  10801704 ttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 224750 - 224898
Alignment:
Q  45 ttttatggcttaaagcggttcccttaaaagctaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 144  Q
    ||||||||||||| |||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||  | || || ||||||||    
T  224750 ttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaaggaatgt 224849  T
Q  145 ccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggag 193  Q
    |||| ||||||   ||   | ||||||||||||||||||||||||||||    
T  224850 ccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggag 224898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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