View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_697 (Length: 212)

Name: NF10954A_low_697
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_697
NF10954A_low_697
[»] chr1 (5 HSPs)
chr1 (16-193)||(5193600-5193777)
chr1 (16-193)||(43297797-43297962)
chr1 (22-146)||(31325504-31325626)
chr1 (43-149)||(50451366-50451472)
chr1 (25-98)||(50237120-50237193)
[»] chr3 (2 HSPs)
chr3 (22-146)||(38647734-38647858)
chr3 (22-146)||(23423972-23424096)
[»] chr2 (3 HSPs)
chr2 (22-109)||(572700-572787)
chr2 (25-116)||(16321950-16322041)
chr2 (111-191)||(570427-570507)
[»] chr7 (1 HSPs)
chr7 (22-137)||(23208421-23208536)
[»] chr6 (2 HSPs)
chr6 (22-146)||(24894391-24894515)
chr6 (36-140)||(35232966-35233070)
[»] chr8 (1 HSPs)
chr8 (22-107)||(26972965-26973050)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 5193600 - 5193777
Alignment:
Q  16 acatcctctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaa 115  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5193600 acatcatctccaactatgtgccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggcagcaa 5193699  T
Q  116 acacttcattcttggtggtaggtttagtgagggaaagtttttctatctcatcaatggtgggtggtgcgccttcatgga 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  5193700 acacttcattcttggtggtaggtttagtgaggaaaagtttttctatgtcatcaatggtgggtggtgtgccttcatgga 5193777  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 43297962 - 43297797
Alignment:
Q  16 acatcctctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaa 115  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| |||||||  | ||    
T  43297962 acatcatctccaactatgtgccaatattgtttgaagaagatgcaatggaagccatcagggtcgggtgctttgtagggtttcatggagttaagggcggtaa 43297863  T
Q  116 acacttcattcttggtggtaggtttagtgagggaaagtttttctatctcatcaatggtgggtggtgcgccttcatgga 193  Q
    |||| |||||            ||| |||||||||||||||| ||| ||||||||||||| ||||||||||| |||||    
T  43297862 acacatcatt------------tttggtgagggaaagtttttgtatgtcatcaatggtggctggtgcgcctttatgga 43297797  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 31325504 - 31325626
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacactt 121  Q
    ||||||||||||  |||||||||||| |||||||| ||| ||||  |||| | ||| ||||||||||| ||||||||||| ||||||| |||| | ||||    
T  31325504 tctccaactatg--ccaatattgtttgaagaagatacaatggaaaccatctgagtcaggtgctttgtaaggtttcatggagttaagggcagcataaactt 31325601  T
Q  122 cattcttggtggtaggtttagtgag 146  Q
    |||| |||||| |||| || |||||    
T  31325602 catttttggtgataggcttggtgag 31325626  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 50451472 - 50451366
Alignment:
Q  43 tgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacacttcattcttggtggtaggtttag 142  Q
    ||||| |||||||||||| ||||  |||| ||| |||| ||||| || ||||||||||| || || | |||||||||||| ||||| ||| | |||| ||    
T  50451472 tgtttgaagaagatgcaatggaaaccatccgggccgggagctttataaggtttcatggagtttagtgcagcaaacacttcgttcttagtgatgggttcag 50451373  T
Q  143 tgaggga 149  Q
    |||||||    
T  50451372 tgaggga 50451366  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 50237120 - 50237193
Alignment:
Q  25 ccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcat 98  Q
    ||||| |||| |||||||||||| ||||| |||||| ||||| |||| ||  | ||||||||||| ||||||||    
T  50237120 ccaacaatgtgccaatattgtttgaagaaaatgcaatggaagccatctggtccaggtgctttgtaaggtttcat 50237193  T

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Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 38647734 - 38647858
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacactt 121  Q
    ||||| ||||||| |||||||||||| |||||||| ||| ||||  |||| ||| ||||||||||||| ||||||||||| ||||| | ||||||||| |    
T  38647734 tctccgactatgtgccaatattgtttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaagtgcagcaaacacct 38647833  T
Q  122 cattcttggtggtaggtttagtgag 146  Q
    |||| |||||| ||||||| |||||    
T  38647834 catttttggtgataggtttggtgag 38647858  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 23424096 - 23423972
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacactt 121  Q
    ||||||||||| | |||||||||||| || ||||| ||| ||||  |||| | | | ||||||||||||| ||||||||| || ||||   |||| ||||    
T  23424096 tctccaactatatgccaatattgtttgaaaaagatacaatggaatccatccgtgccaggtgctttgtatgttttcatggagttgagggctacaaaaactt 23423997  T
Q  122 cattcttggtggtaggtttagtgag 146  Q
    |||| |||||| |||| || |||||    
T  23423996 catttttggtgataggcttggtgag 23423972  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 572787 - 572700
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaaggg 109  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||| |||| ||  ||||||||||||| ||||||||||| |||||||    
T  572787 tctccaactatgtgccaatattgtttgaagaagatgcaatggaagccatctggcccgggtgctttgtagggtttcatggagttaaggg 572700  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 16322041 - 16321950
Alignment:
Q  25 ccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaa 116  Q
    ||||| |||| ||| |||||||||||||| |||||| | ||| |||||||  | ||||||||||| ||||||||||| || |||| ||||||    
T  16322041 ccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagttgagggcagcaaa 16321950  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 570507 - 570427
Alignment:
Q  111 agcaaacacttcattcttggtggtaggtttagtgagggaaagtttttctatctcatcaatggtgggtggtgcgccttcatg 191  Q
    ||||||||||||||| || ||| || |||| |||||||||||| | ||  | |||||||| ||||| || |||||||||||    
T  570507 agcaaacacttcatttttagtgataagtttggtgagggaaagtatgtcagtgtcatcaattgtgggaggcgcgccttcatg 570427  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 23208421 - 23208536
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacactt 121  Q
    ||||||||||| | |||||||||||| |||||||| ||| ||||| | || ||| | || ||||||||||||||||||||||| |||| | |||| ||||    
T  23208421 tctccaactatatgccaatattgtttgaagaagatacaatggaagccgtccgggccaggggctttgtatggtttcatggaattgagggcaacaaaaactt 23208520  T
Q  122 cattcttggtggtagg 137  Q
    |||| |||||| ||||    
T  23208521 catttttggtgatagg 23208536  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 24894391 - 24894515
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacactt 121  Q
    ||||||||||| | |||||||||||| || ||||| ||| ||||  |||| | | | || |||||||||||||||||||| || ||||   |||| ||||    
T  24894391 tctccaactatatgccaatattgtttgaaaaagatacaatggaatccatccgagccaggggctttgtatggtttcatggagttgagggcgacaaaaactt 24894490  T
Q  122 cattcttggtggtaggtttagtgag 146  Q
    |||| |||||| |||| || |||||    
T  24894491 catttttggtgataggcttggtgag 24894515  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 35233070 - 35232966
Alignment:
Q  36 ccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaagggaagcaaacacttcattcttggtggta 135  Q
    ||||||||| || ||||| |||||| ||||  |||| ||  | || |||||||| ||||||||||| || |||| |||||| |||||||| || ||| ||    
T  35233070 ccaatattgcttgaagaatatgcaatggaaaccatctggtcctggagctttgtagggtttcatggagtttagggcagcaaagacttcatttttagtgata 35232971  T
Q  136 ggttt 140  Q
    |||||    
T  35232970 ggttt 35232966  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 26973050 - 26972965
Alignment:
Q  22 tctccaactatgtaccaatattgtttaaagaagatgcaaaggaagtcatcggggtcgggtgctttgtatggtttcatggaattaag 107  Q
    ||||||||||| | ||| ||||||||||| ||||||||  | ||| |||||||| | || |||||||| || ||||| ||||||||    
T  26973050 tctccaactatatgccagtattgtttaaaaaagatgcagtgaaagccatcggggccaggggctttgtagggcttcatagaattaag 26972965  T

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