View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_7 (Length: 523)
Name: NF10954A_low_7
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_7 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 503
Target Start/End: Original strand, 46239893 - 46240383
Alignment:
| Q |
13 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46239893 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat |
46239992 |
T |
|
| Q |
113 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
46239993 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag |
46240092 |
T |
|
| Q |
213 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46240093 |
gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggttgtca |
46240192 |
T |
|
| Q |
313 |
tctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc |
412 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240193 |
tctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc |
46240292 |
T |
|
| Q |
413 |
agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240293 |
agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa |
46240383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 21 - 501
Target Start/End: Original strand, 23541295 - 23541775
Alignment:
| Q |
21 |
tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg |
120 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || | |||||||| ||||| ||||||||||| ||||||| |||||||| |||||||||||| | |
|
|
| T |
23541295 |
tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag |
23541394 |
T |
|
| Q |
121 |
tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa |
220 |
Q |
| |
|
||||| | ||||| |||| |||||||| ||||||||||| ||| | ||||||| | |||| || | ||| ||||| ||| ||| | | ||| |
|
|
| T |
23541395 |
gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa |
23541494 |
T |
|
| Q |
221 |
cccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaaga |
320 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || ||||| || | ||||| ||||| |||||| ||||||| ||||| |||||| |||||| |
|
|
| T |
23541495 |
cccaggtttggttctttctacttttgttttgatggctgtaagaaaggtttcatcaatgggtgtagaccatttgttggggtagatggatgtcatttaaaga |
23541594 |
T |
|
| Q |
321 |
caaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaag |
420 |
Q |
| |
|
||||||||||||||||||| || || | ||||||||| |||||||||||||| || ||||| | |||||||| || || ||||| |||| |||| ||| |
|
|
| T |
23541595 |
caaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttccattggcatttggaatagtagaaacaaagtgtagggaaag |
23541694 |
T |
|
| Q |
421 |
ctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt |
501 |
Q |
| |
|
|||||| |||||||||||| | | ||||||||||||| | |||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
23541695 |
ctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt |
23541775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 224 - 502
Target Start/End: Complemental strand, 30038412 - 30038134
Alignment:
| Q |
224 |
aggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaa |
323 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| || || |||||||| | | || || || || ||| |||| || |||||||| || | || |||| |
|
|
| T |
30038412 |
aggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttgaaaacaa |
30038313 |
T |
|
| Q |
324 |
agtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctg |
423 |
Q |
| |
|
|| ||||||||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || || || |
|
|
| T |
30038312 |
gatacgggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttg |
30038213 |
T |
|
| Q |
424 |
gaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
||| ||||||| | |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
30038212 |
gaaatggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta |
30038134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 403
Target Start/End: Original strand, 34584674 - 34584859
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || || ||| ||||||| ||||| ||||| || || || || || ||||| |||||| | | |
|
|
| T |
34584674 |
caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga |
34584773 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa |
403 |
Q |
| |
|
| ||| | ||||| || ||||| || || ||||| || ||||| | |||||||| || | ||||||||| ||||| ||||||||| |
|
|
| T |
34584774 |
aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa |
34584859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 3437574 - 3437088
Alignment:
| Q |
13 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437574 |
ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
3437487 |
T |
|
| Q |
113 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
3437486 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag |
3437387 |
T |
|
| Q |
213 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437386 |
gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtca |
3437287 |
T |
|
| Q |
313 |
tctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc |
412 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437286 |
tctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgc |
3437187 |
T |
|
| Q |
413 |
agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgatgtc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3437186 |
agggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgttgtc |
3437088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 14799118 - 14798952
Alignment:
| Q |
239 |
tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac |
338 |
Q |
| |
|
||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |
|
|
| T |
14799118 |
tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat |
14799019 |
T |
|
| Q |
339 |
tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac |
405 |
Q |
| |
|
| | | ||||| || ||||| |||||||| || ||||||||| | || ||||| |||||||||| |
|
|
| T |
14799018 |
tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac |
14798952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 15246110 - 15245944
Alignment:
| Q |
239 |
tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac |
338 |
Q |
| |
|
||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |
|
|
| T |
15246110 |
tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat |
15246011 |
T |
|
| Q |
339 |
tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac |
405 |
Q |
| |
|
| | | ||||| || ||||| |||||||| || ||||||||| | || ||||| |||||||||| |
|
|
| T |
15246010 |
tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac |
15245944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 502
Target Start/End: Original strand, 29878125 - 29878409
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||| || || |||||||| | | || || || || ||| |||| || |||||||| || | | |
|
|
| T |
29878125 |
caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga |
29878224 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
417 |
Q |
| |
|
| |||| |||||||| ||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || |
|
|
| T |
29878225 |
aaacaagatatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga |
29878324 |
T |
|
| Q |
418 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
29878325 |
aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
29878409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 218 - 502
Target Start/End: Complemental strand, 3921483 - 3921199
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||| || || |||||||| | | || || || || ||| |||| || |||||||| || | | |
|
|
| T |
3921483 |
caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga |
3921384 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
417 |
Q |
| |
|
| |||| || ||||| ||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || |
|
|
| T |
3921383 |
aaacaagataagggggacaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga |
3921284 |
T |
|
| Q |
418 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
3921283 |
aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
3921199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 502
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
| Q |
326 |
tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
425 |
Q |
| |
|
|||||||| ||||| | |||||||| || |||||||||||||||||||||||||| || || ||||| | |||||||||||||||| || ||| |||| |
|
|
| T |
6869027 |
tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
6869126 |
T |
|
| Q |
426 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
| ||||||||| |||||||| |||| || || || ||||| |||| |||| |||||||||||||| || |||||| |
|
|
| T |
6869127 |
aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta |
6869201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 502
Target Start/End: Complemental strand, 4497506 - 4497222
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
||||| || ||||| ||||| ||||||| |||||||| ||||| | ||| || | | || |||||| || ||| | ||||||||||| || || | | |
|
|
| T |
4497506 |
caaccaagatttgggtctttctacttttcctttgatggatgcaagagaggattcaaagctgcatgtagaccttttgtgggggttgatgggtgccacttga |
4497407 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
417 |
Q |
| |
|
|||| || ||||| || ||||| || | |||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| ||| | | ||| |
|
|
| T |
4497406 |
agactaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggc |
4497307 |
T |
|
| Q |
418 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
||||||||| ||||| |||||| || || || ||||||| || || |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4497306 |
aagctggaaatggtttatggagctgttgatgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta |
4497222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 11318469 - 11318291
Alignment:
| Q |
215 |
ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc |
314 |
Q |
| |
|
||||| || ||||||||| ||||| |||| |||||||| ||||||||||| ||| | | |||||| || ||||| || |||||||| ||||||| |
|
|
| T |
11318469 |
ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc |
11318370 |
T |
|
| Q |
315 |
taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
393 |
Q |
| |
|
||||||| | ||||| || ||||| || ||||| |||| |||||||||||||| || || |||||| | |||||||| |
|
|
| T |
11318369 |
taaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatattttcctttagcatttgg |
11318291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 502
Target Start/End: Original strand, 18005 - 18289
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||| | |||||| | | || |||||| || ||| | ||||| ||||| || ||| | | |
|
|
| T |
18005 |
caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga |
18104 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
417 |
Q |
| |
|
| || || ||||| || ||||| || | |||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | ||| |
|
|
| T |
18105 |
aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggc |
18204 |
T |
|
| Q |
418 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18205 |
aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
18289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 502
Target Start/End: Complemental strand, 24676326 - 24676042
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||| | |||||| | | || |||||| || ||| | ||||| ||||| || ||| | | |
|
|
| T |
24676326 |
caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga |
24676227 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
417 |
Q |
| |
|
| || || ||||| || ||||| || | |||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | ||| |
|
|
| T |
24676226 |
aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggc |
24676127 |
T |
|
| Q |
418 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
502 |
Q |
| |
|
||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24676126 |
aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
24676042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
| Q |
281 |
tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc |
380 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||| ||||| |||||||| ||| || | |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40153 |
tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc |
40054 |
T |
|
| Q |
381 |
c |
381 |
Q |
| |
|
| |
|
|
| T |
40053 |
c |
40053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 502
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
| Q |
399 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
498 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| || || || ||||||| |||||||| |||||||||||||| || || |
|
|
| T |
36915336 |
ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa |
36915435 |
T |
|
| Q |
499 |
ggta |
502 |
Q |
| |
|
|||| |
|
|
| T |
36915436 |
ggta |
36915439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 403
Target Start/End: Original strand, 30964560 - 30964745
Alignment:
| Q |
218 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
317 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || || ||| ||||||| ||||| ||||| || || || || || ||||| |||||| | | |
|
|
| T |
30964560 |
caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga |
30964659 |
T |
|
| Q |
318 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa |
403 |
Q |
| |
|
| ||| | ||||| || ||||| || || ||||| || ||||| | |||||||| || | ||||||||| ||||| ||||||||| |
|
|
| T |
30964660 |
aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa |
30964745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 393
Target Start/End: Original strand, 43429 - 43607
Alignment:
| Q |
215 |
ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc |
314 |
Q |
| |
|
||||| || ||||||||| ||||| |||| |||||||| ||||||||||| ||| | | |||||| || ||||| || |||||||| ||||||| |
|
|
| T |
43429 |
ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc |
43528 |
T |
|
| Q |
315 |
taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
393 |
Q |
| |
|
||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | |||||||| |
|
|
| T |
43529 |
taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg |
43607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 18131739 - 18131561
Alignment:
| Q |
215 |
ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc |
314 |
Q |
| |
|
||||| || ||||||||| ||||| |||| |||||||| ||||||||||| ||| | | |||||| || ||||| || |||||||| ||||||| |
|
|
| T |
18131739 |
ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc |
18131640 |
T |
|
| Q |
315 |
taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
393 |
Q |
| |
|
||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | |||||||| |
|
|
| T |
18131639 |
taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg |
18131561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University