View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_701 (Length: 210)
Name: NF10954A_low_701
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_701 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 34575708 - 34575879
Alignment:
| Q |
20 |
agttcttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaat-ctaacaga |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34575708 |
agtttttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaatactaacaga |
34575807 |
T |
|
| Q |
119 |
tgttcaaagagcacacatgttattgggaaaatagagaggttttgacattcagtaacatatatatattcattgttc |
193 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34575808 |
tgttctaagagcacacatgttaatgg-aaaatagagaagttttgacattcagtaacatat--atattcattgttc |
34575879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 34576495 - 34576666
Alignment:
| Q |
20 |
agttcttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaat-ctaacaga |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34576495 |
agtttttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaatactaacaga |
34576594 |
T |
|
| Q |
119 |
tgttcaaagagcacacatgttattgggaaaatagagaggttttgacattcagtaacatatatatattcattgttc |
193 |
Q |
| |
|
||||| |||||||||||||||| | | |||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34576595 |
tgttctaagagcacacatgttaatcg-aaaatagagaagttttgacattcagtaacatat--atattcattgttc |
34576666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University