View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_705 (Length: 210)
Name: NF10954A_low_705
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_705 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22782248 - 22782040
Alignment:
| Q |
1 |
tagttacaatgcatgaaaaagtatt----taccatgtaactattgcgtactaggcaaacgacgtgatctgcaatgcttaatcattcatttgactagtttc |
96 |
Q |
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| T |
22782248 |
tagttacaatgcatgaaaaagtattgacgtacggtgtaactattgcgtactagctaaacgacatgatctacaatgcttaatccttcattcgactagtttc |
22782149 |
T |
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| Q |
97 |
gcaagtagtccatgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggtctttgg |
196 |
Q |
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| T |
22782148 |
acaagtagtgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatctattgacaaggtctttgg |
22782049 |
T |
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| Q |
197 |
tgcatatct |
205 |
Q |
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||||||||| |
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| T |
22782048 |
tgcatatct |
22782040 |
T |
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Target: scaffold0370 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 9028 - 9089
Alignment:
| Q |
107 |
catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct |
168 |
Q |
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| T |
9028 |
catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct |
9089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 14318 - 14379
Alignment:
| Q |
107 |
catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct |
168 |
Q |
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| T |
14318 |
catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct |
14379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 8821847 - 8821922
Alignment:
| Q |
111 |
ataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgaca |
186 |
Q |
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||||||||||| ||||||||| ||||||||| | ||| |||||| | ||||||||| ||||||||| ||||||| |
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| T |
8821847 |
ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcctagacatgatctattgaca |
8821922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 2883147 - 2883066
Alignment:
| Q |
109 |
tgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggt |
190 |
Q |
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||||||||| ||| ||||||||| ||| | || |||||| |||| ||||||||||| | |||||||||| |||||||||| |
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| T |
2883147 |
tgataactctcatggtagtgggatcatggtgtcctatgttcggctttaatctcctctcatcgacatgatccgttgacaaggt |
2883066 |
T |
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