View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_706 (Length: 210)
Name: NF10954A_low_706
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_706 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 47467032 - 47467196
Alignment:
| Q |
9 |
atggacatcactaagcatgaaacacagattttgctgagttatccgcattcgaccaataacaatcggttttattatatgggattaaatttttaacaacatt |
108 |
Q |
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| T |
47467032 |
atggacacaactaagcatgaaacacaaattttgctgagttatccgcattcgaccaatgacaatcggttttattatatgggattaaatttttaacaacatt |
47467131 |
T |
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| Q |
109 |
caaagagaccagaaactagtttgggtctcaaacactgaggtacaaaactggcatcaagctatgat |
173 |
Q |
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| T |
47467132 |
caaagagaccagaaactagtttgagtctcaaacactgaggtacaaaactggcatcaagctatgat |
47467196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 47227578 - 47227432
Alignment:
| Q |
20 |
taagcatgaaacacagattttgctgagttatccgcattcgaccaataacaatcggttttatta-tatgggattaaatttttaacaacattcaaagagacc |
118 |
Q |
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| T |
47227578 |
taagcatggaacacaaatttggctgagctatacgtattcaaccaataacaatcagttttattcgtatgggattaactttgagtta---tgcaaagagacc |
47227482 |
T |
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| Q |
119 |
agaaactagtttgggtctcaaacactgaggtacaaaactggcatcaagctatg |
171 |
Q |
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| T |
47227481 |
agaaactagtttgaatctcaaaca--gaggtac-aaactggcatcaaggtatg |
47227432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 28831015 - 28831076
Alignment:
| Q |
20 |
taagcatgaaacacagattttgctgagttatccgcattcgaccaataacaatcggttttatt |
81 |
Q |
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| T |
28831015 |
taagcatgaaacacaaattttgctgagttatccgtattcaaccaataacactaggttttatt |
28831076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 46923105 - 46923155
Alignment:
| Q |
121 |
aaactagtttgggtctcaaacactgaggtacaaaactggcatcaagctatg |
171 |
Q |
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| T |
46923105 |
aaactagtttgagtctcaaacactgaggtacaaaattggcatcgagctatg |
46923155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 46922960 - 46923015
Alignment:
| Q |
20 |
taagcatgaaacacagattttgctgagttatccgcattcgaccaataacaatcggttttatt |
81 |
Q |
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| T |
46922960 |
taagcatgaaacacaaattttgctgagttatc------cgaccattaacaatcggttttatt |
46923015 |
T |
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