View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_708 (Length: 209)
Name: NF10954A_low_708
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_708 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 14871056 - 14871225
Alignment:
| Q |
14 |
tggacatcatgaccactgttgtataaaacatgtgagttgaggttgaaatggttgaataaatgtatatcgatatgaggtcaacgtaatcggtatggtttta |
113 |
Q |
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| T |
14871056 |
tggacatcatgacta-tgttgtatgaaacatgtgagttgaggttgaaatggttgaataaatgtatatcaatatgaagtcaacgtaatcgatatgatttta |
14871154 |
T |
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| Q |
114 |
atcgtatgaacattgatatggacatcaaacgcaacgtgaacaacaatgcggtaacaccttattataaattt |
184 |
Q |
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| T |
14871155 |
atcgcatgaacatcaatatggacatcagacgcgacgtgaacaacgatgcggtgacgccttattatcaattt |
14871225 |
T |
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Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 18657457 - 18657289
Alignment:
| Q |
16 |
gacatcatgaccactgttgtataaaacatgtgagttgaggttgaaatggttgaataaatgtatatcgatatgaggtcaacgtaatcggtatggttttaat |
115 |
Q |
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| T |
18657457 |
gacatcatgactactgtagtatgaaacatgtgagttgagtttgaaatggttgaataaatgtatatcgatatgaggtcaacataatcggtgtggttttaat |
18657358 |
T |
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| Q |
116 |
cgtatgaacattgatatggacatcaaacgcaacgtgaacaacaatgcggtaacaccttattataaattt |
184 |
Q |
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| T |
18657357 |
cgcatgaacatctttatcgacatcagacgcgacgcgaacaacgatgcggtgacgccttattatcaattt |
18657289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 19211288 - 19211132
Alignment:
| Q |
28 |
actgttgtataaaacatgtgagttgaggttgaaatggttgaataaatgtatatcgatatgaggtcaacgtaatcggtatggttttaatcgtatgaacatt |
127 |
Q |
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| T |
19211288 |
actgttgtatgaaacatgtgagttgagtttgaaatggttgaataaatgtatatcgatatgagatcaacgtaatcagtgtggttttaatcgaatgaacatc |
19211189 |
T |
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| Q |
128 |
gatatggacatcaaacgcaacgtgaacaacaatgcggtaacaccttattataaattt |
184 |
Q |
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| T |
19211188 |
gatatggacatcatacgcggcgcgaacaacgatgcggtgacgccttattatcaattt |
19211132 |
T |
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