View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_710 (Length: 209)
Name: NF10954A_low_710
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_710 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 42401555 - 42401736
Alignment:
| Q |
14 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgttcct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42401555 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatcgggagggatgatattgttcct |
42401654 |
T |
|
| Q |
114 |
cttgaaacatgtctcaatgatgttgacagaatcgttgatacggtagctgatccgagttaaaggccaagtttcattgctgatg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42401655 |
cttgaaacatgtctcaatgatgttgacagaatcgttaatacggtagctgatccgagttaaaggccaagtttcattgctgatg |
42401736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 18092510 - 18092340
Alignment:
| Q |
14 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgttcct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18092510 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatcgggagggatgatattgttcct |
18092411 |
T |
|
| Q |
114 |
cttgaaacatgtctcaatgatgttgacagaatcgttgatacggtagctgatccgagttaaaggccaagttt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18092410 |
cttgaaacatgtctcaatgatgttgacagaatcgttaatacggtagctgatccgagttaaaggccaagttt |
18092340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 37152184 - 37152003
Alignment:
| Q |
14 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgttcct |
113 |
Q |
| |
|
||||||||||||| || || ||||||||||| |||||| ||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
37152184 |
ttggtgttccgagacaactcccgtccacattaagaatgttacaaatattgttattttgattccattttaccatgcgatcgggagggatgatattgctcct |
37152085 |
T |
|
| Q |
114 |
cttgaaacatgtctcaatgatgttgacagaatcgttgatacggtagctgatccgagttaaaggccaagtttcattgctgatg |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37152084 |
cttgaaacatgtctggatgatgttgacagaatcgttgatgcggtagctgatccgagttaaaggccaagtttcattgctgatg |
37152003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 39463988 - 39463807
Alignment:
| Q |
14 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgttcct |
113 |
Q |
| |
|
||||||||||||| || || ||||||||||| || ||| ||||| ||| ||||||||||||||||| ||||||||||| |||||||||| |||| |||| |
|
|
| T |
39463988 |
ttggtgttccgagacaactcccgtccacattaaggatgtgacaatgattgttattttgattccattttaccatgcgatcgggagggatgacattgctcct |
39463889 |
T |
|
| Q |
114 |
cttgaaacatgtctcaatgatgttgacagaatcgttgatacggtagctgatccgagttaaaggccaagtttcattgctgatg |
195 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39463888 |
cttgaaacttgactcgatgacgttgacagaatcgttgatacggtagctgatcctagttaaaggccaagtttcattgctgatg |
39463807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 21788981 - 21788836
Alignment:
| Q |
14 |
ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgttcct |
113 |
Q |
| |
|
|||| |||||||| || || ||||||||||| || ||| ||||| ||| ||||||||||||||||| ||||| ||||| |||||||||| |||| |||| |
|
|
| T |
21788981 |
ttggagttccgagacaactcccgtccacattaaggatgtgacaatgattgttattttgattccattttaccatacgatcgggagggatgacattgctcct |
21788882 |
T |
|
| Q |
114 |
cttgaaacatgtctcaatgatgttgacagaatcgttgatacggtag |
159 |
Q |
| |
|
| |||||| || ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21788881 |
catgaaacttgactcgatgacgttgacagaatcgttgatacggtag |
21788836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 15463000 - 15463127
Alignment:
| Q |
64 |
ttattttgattccatttaaccatgcgatctggagggatgatattgttcctcttgaaacatgtctcaatgatgttgacagaatcgttgatacggtagctga |
163 |
Q |
| |
|
||||||||||||||| | ||||| | ||| |||||||||| ||| || | |||||| | ||| ||| |||||||||||| || ||||||||||||| |
|
|
| T |
15463000 |
ttattttgattccatattaccatacaatcgggagggatgacattactctgcatgaaactttactcggtgacgttgacagaatcattaatacggtagctga |
15463099 |
T |
|
| Q |
164 |
tccgagttaaaggccaagtttcattgct |
191 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
15463100 |
tcctagttaaaggccaagtttcattgct |
15463127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 2960609 - 2960510
Alignment:
| Q |
89 |
gatctggagggatgatattgttcctcttgaaacatgtctcaatgatgttgacagaatcgttgatacggtagctgatccgagttaaaggccaagtttcatt |
188 |
Q |
| |
|
|||| |||||||||| ||| || || |||||| || |||||||| |||||| |||| || |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2960609 |
gatcgggagggatgacattactcttcatgaaacttgactcaatgacattgacataatcattaatacggtagctgatcctagttaaaggccaagtttcatt |
2960510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University