View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_712 (Length: 209)

Name: NF10954A_low_712
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_712
NF10954A_low_712
[»] chr5 (6 HSPs)
chr5 (23-61)||(19237773-19237811)
chr5 (31-61)||(16569540-16569570)
chr5 (20-61)||(23622613-23622654)
chr5 (20-61)||(29955453-29955494)
chr5 (20-61)||(36045027-36045068)
chr5 (29-57)||(7871937-7871965)
[»] chr2 (4 HSPs)
chr2 (19-61)||(11818432-11818474)
chr2 (20-57)||(23379978-23380015)
chr2 (20-61)||(26501264-26501305)
chr2 (20-57)||(30848315-30848352)
[»] scaffold0341 (2 HSPs)
scaffold0341 (20-57)||(1929-1966)
scaffold0341 (20-57)||(9585-9622)
[»] chr8 (4 HSPs)
chr8 (20-61)||(2246710-2246751)
chr8 (20-57)||(13700129-13700166)
chr8 (20-57)||(22897971-22898008)
chr8 (29-61)||(19382633-19382665)
[»] chr3 (5 HSPs)
chr3 (20-57)||(4479866-4479903)
chr3 (20-57)||(14485654-14485691)
chr3 (20-66)||(36144836-36144882)
chr3 (20-57)||(16877963-16878000)
chr3 (20-53)||(45004299-45004332)
[»] chr1 (4 HSPs)
chr1 (20-61)||(3603510-3603551)
chr1 (20-57)||(6507904-6507941)
chr1 (31-61)||(5185261-5185291)
chr1 (20-53)||(28385221-28385254)
[»] chr7 (5 HSPs)
chr7 (20-57)||(29961970-29962007)
chr7 (20-57)||(30502616-30502653)
chr7 (20-61)||(33611022-33611063)
chr7 (20-61)||(42510026-42510067)
chr7 (20-61)||(48770222-48770263)
[»] chr6 (3 HSPs)
chr6 (20-61)||(23508839-23508880)
chr6 (20-56)||(6695689-6695725)
chr6 (20-56)||(35087841-35087877)
[»] chr4 (4 HSPs)
chr4 (20-61)||(13686118-13686159)
chr4 (20-57)||(30190940-30190977)
chr4 (20-61)||(37061038-37061079)
chr4 (20-56)||(18878284-18878320)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 19237773 - 19237811
Alignment:
Q  23 tgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  19237773 tgaacctcttattattaatgaaatgttataagcatattt 19237811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 16569570 - 16569540
Alignment:
Q  31 ttattattaatgaaatgttataagcatattt 61  Q
    |||||||||||||||||||||||||||||||    
T  16569570 ttattattaatgaaatgttataagcatattt 16569540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 23622613 - 23622654
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  23622613 tattgaatctcttattattaatgaaatgctataagcatattt 23622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 29955494 - 29955453
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| || ||||||||||||||||||||||| |||||||    
T  29955494 tattgaatcttttattattaatgaaatgttataatcatattt 29955453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 36045027 - 36045068
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  36045027 tattgaatctcttattattaatgaaatgctataagcatattt 36045068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 7871965 - 7871937
Alignment:
Q  29 tattattattaatgaaatgttataagcat 57  Q
    |||||||||||||||||||||||||||||    
T  7871965 tattattattaatgaaatgttataagcat 7871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 11818474 - 11818432
Alignment:
Q  19 atattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  11818474 atattgaacctcttattattaatgaaatgctataagcatattt 11818432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 23379978 - 23380015
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  23379978 tattgaaactattattattaatgaaatgttataagcat 23380015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 26501305 - 26501264
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  26501305 tattgaacctattattataaatgaaatgctataaacatattt 26501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 30848315 - 30848352
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  30848315 tattgaatctattattattaatgaaatgctataagcat 30848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 1966 - 1929
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    |||||||||| |||||||||||||||||||||||||||    
T  1966 tattgaacctgttattattaatgaaatgttataagcat 1929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 9622 - 9585
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9622 tattgaacctgttattattaatgaaatgttataagcat 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 2246751 - 2246710
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  2246751 tattgaacctcttattattaatgaaatgctataagcatattt 2246710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13700166 - 13700129
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  13700166 tattgaaactattattattaatgaaatgctataagcat 13700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 22897971 - 22898008
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  22897971 tattgaaactattattattaatgaaatgctataagcat 22898008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 19382665 - 19382633
Alignment:
Q  29 tattattattaatgaaatgttataagcatattt 61  Q
    ||||||||||||||||||| |||||||||||||    
T  19382665 tattattattaatgaaatgctataagcatattt 19382633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 4479903 - 4479866
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4479903 tattgaatctattattattaatgaaatgttataagcat 4479866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 14485654 - 14485691
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    |||||||||||||||||||||||||||| |||||||||    
T  14485654 tattgaacctattattattaatgaaatgctataagcat 14485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 36144836 - 36144882
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatatttgcttt 66  Q
    |||||||||| || |||||||||||||| ||||||||||||| ||||    
T  36144836 tattgaacctcttgttattaatgaaatgctataagcatattttcttt 36144882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 16878000 - 16877963
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  16878000 tattgaaactattattattaatgaaatgctataagcat 16877963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 45004299 - 45004332
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataa 53  Q
    |||||||||||||||||||||||||||| |||||    
T  45004299 tattgaacctattattattaatgaaatgctataa 45004332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 3603551 - 3603510
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  3603551 tattgaacctcttattattaatgaaatgttataaacatattt 3603510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 6507941 - 6507904
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6507941 tattgaacctgttattattaatgaaatgttataagcat 6507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 5185291 - 5185261
Alignment:
Q  31 ttattattaatgaaatgttataagcatattt 61  Q
    |||||||||||||||||||||||||||||||    
T  5185291 ttattattaatgaaatgttataagcatattt 5185261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 28385221 - 28385254
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataa 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  28385221 tattgaaactattattattaatgaaatgttataa 28385254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 29961970 - 29962007
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29961970 tattgaatctattattattaatgaaatgctataagcat 29962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 30502616 - 30502653
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| || |||||||||||||||||||||||||||    
T  30502616 tattgaaactcttattattaatgaaatgttataagcat 30502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 33611063 - 33611022
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  33611063 tattgaacctcttattattaataaaatgctataagcatattt 33611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 42510067 - 42510026
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||    
T  42510067 tattgaaactattatcattaatgaaatgttataagcacattt 42510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 48770222 - 48770263
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  48770222 tattgaaactcttattattaatgaaatgctataagcatattt 48770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 23508880 - 23508839
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    |||||||||| |||||||||||||||||  ||||||||||||    
T  23508880 tattgaacctcttattattaatgaaatgcaataagcatattt 23508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6695689 - 6695725
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagca 56  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6695689 tattgaaactattatcattaatgaaatgttataagca 6695725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 35087877 - 35087841
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagca 56  Q
    ||||||| | |||||||||||||||||||||||||||    
T  35087877 tattgaaacgattattattaatgaaatgttataagca 35087841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 13686118 - 13686159
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  13686118 tattgaatctcttattattaatgaaatgctataagcatattt 13686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 30190977 - 30190940
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcat 57  Q
    ||||||| || |||||||||||||||||||||||||||    
T  30190977 tattgaaactcttattattaatgaaatgttataagcat 30190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 37061079 - 37061038
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagcatattt 61  Q
    ||||||| || |||||||||| ||||||||||||||||||||    
T  37061079 tattgaatctcttattattaacgaaatgttataagcatattt 37061038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 18878284 - 18878320
Alignment:
Q  20 tattgaacctattattattaatgaaatgttataagca 56  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  18878284 tattgaaactattattattaatgaaatgctataagca 18878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University