View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_722 (Length: 207)
Name: NF10954A_low_722
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_722 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 10707893 - 10707708
Alignment:
| Q |
21 |
atgacaagacaaaaatactcttaagtattttatatagtttcaatttcagagttccactaaataaaaagaattactagccagtagtttcaaatttcaattt |
120 |
Q |
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| T |
10707893 |
atgacaagacaaaaatactcttaagtattt-atatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaattccaattt |
10707795 |
T |
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| Q |
121 |
catggctgatcgtgtggtaagaccaaggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgttgttagtgttta |
207 |
Q |
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| T |
10707794 |
catggctgatcgtgtggtaagaccaaggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgttgttaatgttta |
10707708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 10694201 - 10694105
Alignment:
| Q |
27 |
agacaaaaatactcttaagtattttatatagtttcaatttcagagttccactaaataaaaagaattactagccagtagtttcaaatttcaatttcat |
123 |
Q |
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| T |
10694201 |
agacaaaaatactcttaagtattttatatagtttcaatttcatagctccactaaataaaaagaaccactagctagtagtttcaaatttcaatttcat |
10694105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 10694037 - 10693950
Alignment:
| Q |
112 |
tttcaatttcatggctgatcgtgtggtaagaccaa---ggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgtt |
196 |
Q |
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| T |
10694037 |
tttcaatttcatggctgatcatgttgtaagaccaacaagatccaattttaatcgaagtcatgaagtgaccataaatgttgtgagtgtt |
10693950 |
T |
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