View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_723 (Length: 206)
Name: NF10954A_low_723
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_723 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 38568372 - 38568518
Alignment:
| Q |
40 |
caaattactactagtaatgacgttctgggtttggtgtccgtgctcgtggttcatagattcaaagtaaccatttactccaaaatcatattttacattcaac |
139 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568372 |
caaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggttcatagattcaaagtaaccatttactccaaaatcatattttacattcaac |
38568471 |
T |
|
| Q |
140 |
tctaaaattcataccttctcacccatggcatcttgaataagaacagt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568472 |
tctaaaattcataccttctcacccatggcatcttgaataagaacagt |
38568518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 38527178 - 38527217
Alignment:
| Q |
147 |
ttcataccttctcacccatggcatcttgaataagaacagt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaacagt |
38527217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 51198113 - 51198077
Alignment:
| Q |
150 |
ataccttctcacccatggcatcttgaataagaacagt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51198113 |
ataccttctcacccatggcatcttgaataagaacagt |
51198077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 29938485 - 29938522
Alignment:
| Q |
150 |
ataccttctcacccatggcatcttgaataagaacagtg |
187 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
29938485 |
ataccttctcccccatggcatctttaataagaacagtg |
29938522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 51144458 - 51144422
Alignment:
| Q |
150 |
ataccttctcacccatggcatcttgaataagaacagt |
186 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |
|
|
| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagt |
51144422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 49738535 - 49738568
Alignment:
| Q |
150 |
ataccttctcacccatggcatcttgaataagaac |
183 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
49738535 |
ataccttctctcccatggcatcttgaataagaac |
49738568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University