View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_724 (Length: 206)
Name: NF10954A_low_724
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_724 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 35489618 - 35489807
Alignment:
| Q |
17 |
gacatcatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaaca |
116 |
Q |
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| T |
35489618 |
gacatgatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaaca |
35489717 |
T |
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| Q |
117 |
tgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggagctaaccatcccaacgcaccccaag |
206 |
Q |
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| T |
35489718 |
tgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactgggaactaaccatcccagcgcaccccaag |
35489807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 18233837 - 18233891
Alignment:
| Q |
55 |
tccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtg |
109 |
Q |
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| T |
18233837 |
tccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtg |
18233891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 14233314 - 14233147
Alignment:
| Q |
28 |
cacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgca |
127 |
Q |
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| T |
14233314 |
cacaaaaccagcaaagaaaaagaaaaggccaaacttcaagtgacaaagcatggttaggaagacttgagcaatcataaatgtgaagaacatgttcaccgca |
14233215 |
T |
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| Q |
128 |
acattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggagctaaccatcccaa |
195 |
Q |
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| T |
14233214 |
acatttatagcttgacctgctggtcgaacctctagagcgcatatttcactaggcactaaccaacccaa |
14233147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 14242988 - 14242821
Alignment:
| Q |
28 |
cacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgca |
127 |
Q |
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| T |
14242988 |
cacaaaaccagcaaagaaaaagaaaaggccaaacttcaagtgacaaagcatggttaggaagacttgagcaatcataaatgtgaagaacatgttcaccgca |
14242889 |
T |
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| Q |
128 |
acattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggagctaaccatcccaa |
195 |
Q |
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| T |
14242888 |
acatttatagcttgacctgctggtcgaacctctagagcgcatacttcactaggcactaaccaacccaa |
14242821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 51580714 - 51580598
Alignment:
| Q |
61 |
cttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcggacttca |
160 |
Q |
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| T |
51580714 |
cttcaagtgacaaagcatgttgaggaaaacttgagcaacaacaaatgtgaataacatgttcacggcaacattgatagcttgacctgcagatcaaacctca |
51580615 |
T |
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| Q |
161 |
agagagcatatttcact |
177 |
Q |
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| T |
51580614 |
agagaacaaatttcact |
51580598 |
T |
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