View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_738 (Length: 203)

Name: NF10954A_low_738
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_738
NF10954A_low_738
[»] chr4 (1 HSPs)
chr4 (17-184)||(40823714-40823881)
[»] chr7 (14 HSPs)
chr7 (24-178)||(20289276-20289430)
chr7 (95-184)||(20303708-20303797)
chr7 (91-171)||(20062518-20062598)
chr7 (70-184)||(20168016-20168130)
chr7 (95-184)||(20284959-20285048)
chr7 (96-184)||(20264020-20264108)
chr7 (96-184)||(20231561-20231649)
chr7 (96-184)||(20243626-20243714)
chr7 (89-184)||(20279529-20279624)
chr7 (95-184)||(20005334-20005423)
chr7 (95-184)||(20294676-20294765)
chr7 (133-184)||(19939125-19939176)
chr7 (133-184)||(19970264-19970315)
chr7 (89-171)||(20273838-20273920)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 40823714 - 40823881
Alignment:
Q  17 ggacatctaaccgctgtattttttatgtaataaattatacgagaagtattttactataaaattagatgaggaaggcacacttactaagttccgacaaccc 116  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40823714 ggacatataaccgctgcattttttatgtaataaattatacgagaagtattttactataaaattagatgaggaaggcacacttactaagttccgacaaccc 40823813  T
Q  117 taatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40823814 taatagtattggtcttatcttctctccctccaaagattctagccataccaaagtctgatatttttgga 40823881  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 20289430 - 20289276
Alignment:
Q  24 taaccgctgtattttttatgtaataaattatacgagaagtattttactataaaattagatgaggaaggcacacttactaagttccgacaaccctaatagt 123  Q
    ||||| ||| ||||||||||||| | ||||| |   |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| |||||    
T  20289430 taaccactgcattttttatgtaacatattattctccaagtattttactataaaattggacaaggaaggcacacttactaagttccgacaacccttatagt 20289331  T
Q  124 attggccttatcttctctccctccaaagattctagccataccaaagtctgatatt 178  Q
    |||  |  |||||||||||||| | ||||||||||||||||||||||||||||||    
T  20289330 attttctgtatcttctctcccttcgaagattctagccataccaaagtctgatatt 20289276  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 20303797 - 20303708
Alignment:
Q  95 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||||||||||||||| || ||| |||||    
T  20303797 acttactaagttccgacaaccctggtagtattggcctgattttctctccctccaaagattctagccataccaaagtcggaaatttttgga 20303708  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 20062518 - 20062598
Alignment:
Q  91 gcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtc 171  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||| ||||||||    
T  20062518 gcacacttactaagttccgacaaccctagtagtattggcctgatcttctcttccaccaaagattctagccattccaaagtc 20062598  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 20168016 - 20168130
Alignment:
Q  70 ctataaaattagatgaggaaggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaag 169  Q
    |||||| ||| ||| |||||||| ||||||||||||||| |||| |||  |||||||||||| |||||| |  ||||||||||||||||||||||||||     
T  20168016 ctataatattggataaggaaggcgcacttactaagttccaacaatcctgctagtattggcctgatcttcacctcctccaaagattctagccataccaaat 20168115  T
Q  170 tctgatattgttgga 184  Q
    ||||||||| |||||    
T  20168116 tctgatatttttgga 20168130  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 20285048 - 20284959
Alignment:
Q  95 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    ||||||||||||||||| | |||  |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  20285048 acttactaagttccgactatccttctagtattggcctgatcttctccccctccaaagattctaaccataccaaagtctgatatttttgga 20284959  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 20264108 - 20264020
Alignment:
Q  96 cttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||||||||||||| |||  |||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||| |||||    
T  20264108 cttactaagttccgacaatccttctagtattggcctgatcttcacctcctccaaagattctagccataccaaagtctgatatttttgga 20264020  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 20231649 - 20231561
Alignment:
Q  96 cttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||||||||||||| |||  | |||||||||| |||||| |  |||||||||||||||||||||||||||||||||||| |||||    
T  20231649 cttactaagttccgacaatccttctggtattggcctgatcttcacctcctccaaagattctagccataccaaagtctgatatttttgga 20231561  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 20243714 - 20243626
Alignment:
Q  96 cttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||||||||||||| |||  |||||||||||| |||||| |  |||||||| |||||||||| |||||||||||||||| |||||    
T  20243714 cttactaagttccgacaatccttctagtattggcctgatcttcacctcctccaaatattctagccagaccaaagtctgatatttttgga 20243626  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 20279624 - 20279529
Alignment:
Q  89 aggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||||||||| ||||||||||  ||   ||||||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  20279624 aggcacacttactatgttccgacaattctggaagtattgacctgattgtctccccctccaaagattctagccataccaaagtctgatatttttgga 20279529  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 20005334 - 20005423
Alignment:
Q  95 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||| ||||||||||||||   ||||||||| | |||||| ||| ||||||||||||| |||||||||||||| |||||| |||||    
T  20005334 acttactatgttccgacaaccctttgagtattggcatgatcttcactcactccaaagattctggccataccaaagtcagatatttttgga 20005423  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 20294765 - 20294676
Alignment:
Q  95 acttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||||| ||||| |||| |||  |||||||||||| || |||||| |||||||||||||||||||| |||||||| |||||| |||||    
T  20294765 acttactacgttccaacaatcctgctagtattggcctgatgttctctgcctccaaagattctagccattccaaagtccgatatttttgga 20294676  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 19939176 - 19939125
Alignment:
Q  133 atcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  19939176 atcttcactccctccaaagattctggccataccaaagtctgatatttttgga 19939125  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 19970315 - 19970264
Alignment:
Q  133 atcttctctccctccaaagattctagccataccaaagtctgatattgttgga 184  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  19970315 atcttcactccctccaaagattctggccataccaaagtctgatatttttgga 19970264  T

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Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 20273920 - 20273838
Alignment:
Q  89 aggcacacttactaagttccgacaaccctaatagtattggccttatcttctctccctccaaagattctagccataccaaagtc 171  Q
    |||||||||||||||||||| ||||  ||    |||||| ||| ||| |||| ||||||||||||||||||||||||||||||    
T  20273920 aggcacacttactaagttccaacaattctggaggtattgacctgatcgtctccccctccaaagattctagccataccaaagtc 20273838  T

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