View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_74 (Length: 386)
Name: NF10954A_low_74
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 35286600 - 35286244
Alignment:
| Q |
9 |
cacaaatagtaaaaataaaggaatattataaataaaggtatccgaacgcgatctagactgcaacatcgatgttttttatgtttacatgaccgcaatatga |
108 |
Q |
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| T |
35286600 |
cacaaatagtaaaaataaaggaatattataaataaaggtctccgaacgcgatctagactgcaacatcgatgttttttatgtttacatgaccgcaatatga |
35286501 |
T |
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| Q |
109 |
atgcggtcacgtaagttgtattggatcatgattctctacaatatcatatattgtgacgcgacggtgaccatgatttaaaacatcgcatatatacatacat |
208 |
Q |
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| T |
35286500 |
atg---------------tattggatcatgattctctacaatatcatatattgtgacgcgacggtgaccatgatttaaaacatcgcatatatacatacat |
35286416 |
T |
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| Q |
209 |
ataacgaggcgaggcacattattaattacctggtgtttttgctgcagaggtgatttcctgtgctgtgggagaaccatgctctctcttactattactgttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35286415 |
ataacgaggcgaggcacattattaattacctggtgtttttgctgcagaggtgatttcctgtgctgtgggagaaccatgctctctcttactattactgttt |
35286316 |
T |
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| Q |
309 |
ttatttttctgatggccgcaacacggaaagcagttcatgctttcctgatccacgatatattaattaaataac |
380 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35286315 |
ttatttttctgatggccgcaacacggaaagcagctcatgctttcctgatccacgatatattaattaaataac |
35286244 |
T |
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