View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_740 (Length: 203)
Name: NF10954A_low_740
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_740 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 45523342 - 45523170
Alignment:
| Q |
18 |
aatatgatccctcaacaaatcagtctactgtggttggatactgggaaaacattctggcagatgatgtgaagacaccagcagaagtttattctcttctaaa |
117 |
Q |
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| T |
45523342 |
aatatgatccctcaacaaatcagtctactgtggttggatactgggaaaacattctggcagatgatgtgaagacaccagcagaagtttattctcttctaaa |
45523243 |
T |
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| Q |
118 |
agatgatggatatgatattgtctatcggaggatacccttaacaagagagagagatgccttagcctctgatgtc |
190 |
Q |
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| T |
45523242 |
agatgatggatatgatattgtctatcggaggatacccttaacaagagagagagatgccttagcctctgatgtc |
45523170 |
T |
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Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 38079667 - 38079827
Alignment:
| Q |
29 |
tcaacaaatcagtctactgtggttggatactgggaaaacattctggcagatgatgtgaagacaccagcagaagtttattctcttctaaaagatgatggat |
128 |
Q |
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|||||||| || |||| ||| || |||||||||||||||||| ||||||| |||||||| ||| | | ||||||||||||| |||||| ||||| |||| |
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| T |
38079667 |
tcaacaaaccaatctaatgttgtcggatactgggaaaacattttggcagaagatgtgaaaacaactgtagaagtttattctgctctaaaggatgagggat |
38079766 |
T |
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| Q |
129 |
atgatattgtctatcggaggatacccttaacaagagagagagatgccttagcctctgatgt |
189 |
Q |
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| T |
38079767 |
atgatattgtctatcggaggataccgttaacgagggagagagatgctttggcctctgatgt |
38079827 |
T |
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