View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_743 (Length: 202)
Name: NF10954A_low_743
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_743 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 41621452 - 41621592
Alignment:
| Q |
36 |
atattaagtatgaagtaacgaagaatgttgaaaaggaaaaaattcttttacctttagtgctcattgtaacaataagtggagaaagaaagatgatcatatc |
135 |
Q |
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| T |
41621452 |
atattaagtacgaagtaacgaaaaatgttgaaaaggaaaaaattgttttacctctcatgctcattgtaacaataagtggagaaataaagatgatcatatc |
41621551 |
T |
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| Q |
136 |
aaaaacattttttgttagtggattcatgtttgttcctctgt |
176 |
Q |
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| T |
41621552 |
aaaaatattttttgttattggagtcatgtttgttcctctgt |
41621592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 41619220 - 41619259
Alignment:
| Q |
23 |
ataaaatgttaatatattaagtatgaagtaacgaagaatg |
62 |
Q |
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| T |
41619220 |
ataaaatgttaatatattaagtatgaagtaacgaagaatg |
41619259 |
T |
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