View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_744 (Length: 202)

Name: NF10954A_low_744
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_744
NF10954A_low_744
[»] scaffold0036 (1 HSPs)
scaffold0036 (8-117)||(50164-50273)
[»] scaffold0380 (1 HSPs)
scaffold0380 (6-117)||(14536-14647)
[»] chr5 (1 HSPs)
chr5 (8-117)||(38015878-38015987)
[»] scaffold0159 (1 HSPs)
scaffold0159 (10-117)||(33194-33299)
[»] chr2 (3 HSPs)
chr2 (10-117)||(5788821-5788926)
chr2 (10-117)||(3395400-3395507)
chr2 (155-188)||(31897095-31897128)
[»] chr8 (4 HSPs)
chr8 (19-117)||(23141752-23141850)
chr8 (10-117)||(10901390-10901497)
chr8 (19-117)||(42797242-42797340)
chr8 (19-117)||(13756568-13756666)
[»] chr3 (1 HSPs)
chr3 (19-117)||(50331915-50332013)
[»] chr4 (1 HSPs)
chr4 (10-117)||(13228724-13228830)
[»] chr1 (1 HSPs)
chr1 (10-117)||(43387047-43387154)
[»] chr6 (1 HSPs)
chr6 (23-117)||(1599714-1599808)
[»] scaffold0281 (2 HSPs)
scaffold0281 (155-188)||(3101-3134)
scaffold0281 (155-188)||(21208-21241)


Alignment Details
Target: scaffold0036 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 50164 - 50273
Alignment:
Q  8 tgagatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgt 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50164 tgagattgacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactattgcattcaacgtgt 50263  T
Q  108 tattttaact 117  Q
    ||||||||||    
T  50264 tattttaact 50273  T

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Target: scaffold0380 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 14647 - 14536
Alignment:
Q  6 aatgagatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgt 105  Q
    |||||||| ||||||||||||||||||||| |||| |||||||  |||| ||||| |||||  ||||||||||||| ||||||||||| |||||||| ||    
T  14647 aatgagattgacatcacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgttcaacatctactattgcattcaatgt 14548  T
Q  106 gttattttaact 117  Q
    ||||||||||||    
T  14547 gttattttaact 14536  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 38015878 - 38015987
Alignment:
Q  8 tgagatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgt 107  Q
    |||||| ||||||||||||||||||||| |||| || |||| ||||| ||||| |||||  |||||||||| || ||||||||||| |||||||| ||||    
T  38015878 tgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgt 38015977  T
Q  108 tattttaact 117  Q
    ||||||||||    
T  38015978 tattttaact 38015987  T

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Target: scaffold0159 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 33194 - 33299
Alignment:
Q  10 agatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgtta 109  Q
    |||| ||||||||||||||||||||| |||| ||||||| |||||  |||| |||||  ||||||||||||| ||||||||||| |||||||| ||||||    
T  33194 agattgacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 33291  T
Q  110 ttttaact 117  Q
    ||||||||    
T  33292 ttttaact 33299  T

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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 5788821 - 5788926
Alignment:
Q  10 agatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgtta 109  Q
    |||| ||||||||||||||||||||| |||| ||||||| |||||  |||| |||||  ||||||||||||| ||||||||||| |||||||| ||||||    
T  5788821 agattgacatcacaacttcacccaaaatcttaagacattagatat--gagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 5788918  T
Q  110 ttttaact 117  Q
    ||||||||    
T  5788919 ttttaact 5788926  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 3395400 - 3395507
Alignment:
Q  10 agatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgtta 109  Q
    |||| ||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||    
T  3395400 agattgacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgtta 3395499  T
Q  110 ttttaact 117  Q
    ||||||||    
T  3395500 ttttaact 3395507  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 31897128 - 31897095
Alignment:
Q  155 gaaatgaacatttctgccatatccaaacaccaaa 188  Q
    ||||||||||||||||||||||||||||||||||    
T  31897128 gaaatgaacatttctgccatatccaaacaccaaa 31897095  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 23141752 - 23141850
Alignment:
Q  19 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 117  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  23141752 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctactattgcattcaatgtgttattttaact 23141850  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 10901390 - 10901497
Alignment:
Q  10 agatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgtta 109  Q
    |||| ||||||||||||||||||||| |||| | ||||| |||||  |||| |||||  || ||||||  || ||||||||||| |||||||| ||||||    
T  10901390 agattgacatcacaacttcacccaaaatcttaacacattagatatacgagtcatctcacttgtatgttactcaacatctactattgcattcaatgtgtta 10901489  T
Q  110 ttttaact 117  Q
    ||||||||    
T  10901490 ttttaact 10901497  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 42797242 - 42797340
Alignment:
Q  19 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 117  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || |||| |||||| |||||||| ||||||||||||||    
T  42797242 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaact 42797340  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 13756666 - 13756568
Alignment:
Q  19 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 117  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| || ||  ||| |||||  || ||||||||||| |||||||| ||||||||||||||    
T  13756666 tcacaacttcacccaaaatcttaagacattagatacatgagtcatttcacttaaatgtttctcaacatctactattgcattcaatgtgttattttaact 13756568  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 50331915 - 50332013
Alignment:
Q  19 tcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 117  Q
    ||||||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  50331915 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaact 50332013  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 13228830 - 13228724
Alignment:
Q  10 agatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgtta 109  Q
    |||| ||||||||||||||||||||| | || ||| ||| ||||| ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||    
T  13228830 agattgacatcacaacttcacccaaaattttaaga-attagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgtta 13228732  T
Q  110 ttttaact 117  Q
    ||||||||    
T  13228731 ttttaact 13228724  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 43387047 - 43387154
Alignment:
Q  10 agatggacatcacaacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgtta 109  Q
    |||| ||||||||||||||||||||| |||| ||||||| |||||  |||| || ||  |||||||||  || ||||||||||| |||||||| |||| |    
T  43387047 agattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatgtgtaa 43387146  T
Q  110 ttttaact 117  Q
    ||||||||    
T  43387147 ttttaact 43387154  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 1599808 - 1599714
Alignment:
Q  23 aacttcacccaaattcttgagacatttgatatttgagttatctcggttatatgttgttctacatctactatcgcattcaacgtgttattttaact 117  Q
    ||||||||||||| |||| ||||||| ||||  ||||| |||||  |||||||||  || ||||||||||| |||||||| ||||||||||||||    
T  1599808 aacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaact 1599714  T

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Target: scaffold0281 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 3134 - 3101
Alignment:
Q  155 gaaatgaacatttctgccatatccaaacaccaaa 188  Q
    ||||||||||||||||||||||||||||||||||    
T  3134 gaaatgaacatttctgccatatccaaacaccaaa 3101  T

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Target: scaffold0281; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 21241 - 21208
Alignment:
Q  155 gaaatgaacatttctgccatatccaaacaccaaa 188  Q
    ||||||||||||| ||||||||||||||||||||    
T  21241 gaaatgaacatttatgccatatccaaacaccaaa 21208  T

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