View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_78 (Length: 384)
Name: NF10954A_low_78
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 32898988 - 32898615
Alignment:
| Q |
6 |
atcaccaccaccgggaaaaggctgcgccgcggccgccgaggagaaaa-gaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaa |
104 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898988 |
atcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaa |
32898889 |
T |
|
| Q |
105 |
acaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| |
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| T |
32898888 |
acaccgacattcctctgaaaccttgcaaaaggatccattgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttgaagttgt |
32898789 |
T |
|
| Q |
205 |
tgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898788 |
tgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacat |
32898689 |
T |
|
| Q |
305 |
ttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaactg |
378 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32898688 |
ttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaagaggtggaaggtaaactg |
32898615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 126 - 376
Target Start/End: Complemental strand, 17415196 - 17414958
Alignment:
| Q |
126 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
225 |
Q |
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|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||| |
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| T |
17415196 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttg |
17415097 |
T |
|
| Q |
226 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
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| T |
17415096 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
17415009 |
T |
|
| Q |
326 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
376 |
Q |
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| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
17415008 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
17414958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 126 - 376
Target Start/End: Original strand, 20409621 - 20409859
Alignment:
| Q |
126 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
225 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
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| T |
20409621 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
20409720 |
T |
|
| Q |
226 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
325 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||| ||| |
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| T |
20409721 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgt------------tgttggagttacacatttggtcgccgttgaatgtggc |
20409808 |
T |
|
| Q |
326 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
376 |
Q |
| |
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| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
20409809 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
20409859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 126 - 376
Target Start/End: Complemental strand, 46312720 - 46312482
Alignment:
| Q |
126 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
225 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |
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| T |
46312720 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttg |
46312621 |
T |
|
| Q |
226 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||| |
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| T |
46312620 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgtt------------gttggagttacacatttggtcgccgttgaatgtggc |
46312533 |
T |
|
| Q |
326 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
376 |
Q |
| |
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| |||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
46312532 |
gatgctagcggcggtgtaaggagatgaatcaagaagaggtggaagataaac |
46312482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 126 - 376
Target Start/End: Complemental strand, 40169283 - 40169054
Alignment:
| Q |
126 |
cttgcaaaaggatccattgttgcattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttg |
225 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| ||| |||||||||| |
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| T |
40169283 |
cttgcaaaaggatcaattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacattt- |
40169185 |
T |
|
| Q |
226 |
atgttgtagatgttgtggagaaacaggacacgtgctcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggc |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| | |||||||||| ||| |
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| T |
40169184 |
--------gatgttgtggagaaacaggacacgtgctcctttagatcggtgt------------tgttggagttacacatttggtcgccgttgaatgtggc |
40169105 |
T |
|
| Q |
326 |
ggtgctagcggcagtgtagggagatgaatcaagaagaggtggaaggtaaac |
376 |
Q |
| |
|
| ||||||| || ||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
40169104 |
gatgctagcagcggtgtaaggagatgaatcaagaagaggtggaagataaac |
40169054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 46482987 - 46483093
Alignment:
| Q |
148 |
cattcatagaaggtgaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaa |
247 |
Q |
| |
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||||| ||||||| ||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||| |
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| T |
46482987 |
cattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaa |
46483086 |
T |
|
| Q |
248 |
acaggac |
254 |
Q |
| |
|
| ||||| |
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|
| T |
46483087 |
ataggac |
46483093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 46482880 - 46482960
Alignment:
| Q |
28 |
tgcgccgcggccgccgaggagaaaa-gaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaagcagaaaca |
107 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
46482880 |
tgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaaca |
46482960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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