View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_8 (Length: 485)

Name: NF10954A_low_8
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_8
NF10954A_low_8
[»] chr3 (48 HSPs)
chr3 (211-470)||(8549694-8549949)
chr3 (225-422)||(8538390-8538582)
chr3 (226-414)||(28038174-28038362)
chr3 (225-422)||(27954837-27955034)
chr3 (3-111)||(8549590-8549698)
chr3 (260-422)||(30994030-30994192)
chr3 (225-422)||(28152313-28152510)
chr3 (225-422)||(27920868-27921065)
chr3 (279-422)||(28680536-28680679)
chr3 (225-338)||(17743864-17743977)
chr3 (225-338)||(19045184-19045297)
chr3 (225-347)||(27777202-27777324)
chr3 (225-338)||(28187320-28187433)
chr3 (227-329)||(11421887-11421989)
chr3 (225-338)||(28057846-28057959)
chr3 (225-338)||(28068271-28068384)
chr3 (231-422)||(28136984-28137175)
chr3 (248-422)||(27356925-27357099)
chr3 (171-226)||(24644023-24644078)
chr3 (248-380)||(26109643-26109775)
chr3 (248-380)||(26203935-26204067)
chr3 (171-226)||(10238745-10238800)
chr3 (171-226)||(10761183-10761237)
chr3 (171-226)||(11840258-11840313)
chr3 (227-370)||(28508360-28508503)
chr3 (171-225)||(9586545-9586598)
chr3 (171-237)||(17056324-17056390)
chr3 (424-465)||(8538048-8538089)
chr3 (171-224)||(10769502-10769554)
chr3 (171-224)||(23138949-23139001)
chr3 (171-224)||(30051633-30051685)
chr3 (171-224)||(38456083-38456135)
chr3 (254-338)||(28163339-28163423)
chr3 (171-226)||(38449596-38449650)
chr3 (171-226)||(42191753-42191808)
chr3 (171-226)||(49157252-49157306)
chr3 (171-225)||(49151186-49151239)
chr3 (171-225)||(55003934-55003988)
chr3 (171-224)||(8331362-8331414)
chr3 (171-224)||(10244867-10244920)
chr3 (171-224)||(42197695-42197748)
chr3 (248-300)||(26138607-26138659)
chr3 (225-281)||(27430393-27430449)
chr3 (171-205)||(28964473-28964507)
chr3 (171-224)||(11846510-11846562)
chr3 (171-224)||(26429950-26430003)
chr3 (249-422)||(27458097-27458270)
chr3 (248-300)||(26232067-26232119)
[»] scaffold0257 (1 HSPs)
scaffold0257 (227-338)||(19763-19874)
[»] chr2 (18 HSPs)
chr2 (248-422)||(22400839-22401013)
chr2 (248-422)||(22966016-22966190)
chr2 (248-422)||(22792543-22792717)
chr2 (171-226)||(30964900-30964954)
chr2 (171-226)||(35439903-35439957)
chr2 (171-224)||(11049025-11049078)
chr2 (171-224)||(31001951-31002003)
chr2 (171-224)||(36749988-36750041)
chr2 (171-226)||(13461612-13461667)
chr2 (171-222)||(19879170-19879221)
chr2 (171-226)||(35085212-35085267)
chr2 (171-225)||(13455672-13455726)
chr2 (171-221)||(23343140-23343190)
chr2 (171-224)||(13150222-13150274)
chr2 (171-220)||(23283821-23283870)
chr2 (175-224)||(44717342-44717390)
chr2 (249-338)||(8021521-8021610)
chr2 (171-224)||(35091185-35091238)
[»] scaffold0922 (1 HSPs)
scaffold0922 (225-338)||(2399-2512)
[»] chr6 (9 HSPs)
chr6 (171-226)||(17581176-17581231)
chr6 (171-224)||(30906113-30906166)
chr6 (171-226)||(8651336-8651390)
chr6 (171-224)||(25343201-25343254)
chr6 (171-222)||(6096887-6096937)
chr6 (171-226)||(21771097-21771151)
chr6 (171-224)||(4580854-4580907)
chr6 (171-226)||(21191403-21191457)
chr6 (186-226)||(32030014-32030053)
[»] scaffold0012 (1 HSPs)
scaffold0012 (171-224)||(173422-173475)
[»] chr1 (13 HSPs)
chr1 (172-224)||(8093379-8093431)
chr1 (171-226)||(25382068-25382123)
chr1 (171-226)||(31057617-31057671)
chr1 (171-224)||(1077818-1077871)
chr1 (171-224)||(31051119-31051171)
chr1 (171-224)||(50305771-50305824)
chr1 (171-226)||(12184129-12184184)
chr1 (171-225)||(34739560-34739613)
chr1 (171-224)||(25388035-25388088)
chr1 (171-226)||(24927301-24927356)
chr1 (171-206)||(44409592-44409627)
chr1 (171-217)||(25275579-25275625)
chr1 (171-228)||(33458439-33458496)
[»] scaffold0064 (1 HSPs)
scaffold0064 (171-226)||(13845-13900)
[»] chr8 (10 HSPs)
chr8 (171-226)||(39727817-39727871)
chr8 (171-225)||(1883370-1883424)
chr8 (171-224)||(36818546-36818599)
chr8 (171-227)||(32890459-32890515)
chr8 (171-226)||(32896584-32896639)
chr8 (171-224)||(42033372-42033424)
chr8 (171-226)||(22220260-22220313)
chr8 (171-226)||(14417534-14417588)
chr8 (171-205)||(10699622-10699656)
chr8 (171-224)||(42993532-42993585)
[»] chr7 (12 HSPs)
chr7 (171-226)||(351360-351414)
chr7 (231-422)||(8692292-8692483)
chr7 (171-226)||(35153061-35153115)
chr7 (171-224)||(5979709-5979762)
chr7 (171-224)||(18667737-18667790)
chr7 (171-226)||(26383240-26383296)
chr7 (171-225)||(338955-339008)
chr7 (171-226)||(3811701-3811757)
chr7 (171-217)||(28421491-28421537)
chr7 (171-224)||(3817843-3817895)
chr7 (181-226)||(35148552-35148596)
chr7 (182-218)||(7608022-7608058)
[»] chr5 (12 HSPs)
chr5 (171-226)||(32094754-32094809)
chr5 (171-225)||(32097554-32097608)
chr5 (171-224)||(12692813-12692866)
chr5 (171-224)||(30384916-30384969)
chr5 (171-226)||(30771854-30771910)
chr5 (171-226)||(26509430-26509485)
chr5 (171-226)||(28525918-28525972)
chr5 (171-226)||(41296852-41296906)
chr5 (171-225)||(7390080-7390133)
chr5 (171-224)||(28532014-28532066)
chr5 (171-217)||(12686711-12686757)
chr5 (171-223)||(33753763-33753815)
[»] chr4 (14 HSPs)
chr4 (171-226)||(10733882-10733936)
chr4 (171-226)||(10947651-10947705)
chr4 (171-226)||(26957336-26957390)
chr4 (171-226)||(48166751-48166805)
chr4 (171-225)||(10739869-10739922)
chr4 (171-225)||(10953638-10953691)
chr4 (171-224)||(6257737-6257789)
chr4 (171-224)||(26972087-26972139)
chr4 (171-224)||(48160534-48160586)
chr4 (171-224)||(532117-532170)
chr4 (171-224)||(24287561-24287614)
chr4 (183-226)||(50168167-50168210)
chr4 (174-224)||(33458725-33458774)
chr4 (174-224)||(33461850-33461899)
[»] scaffold1114 (1 HSPs)
scaffold1114 (171-224)||(637-690)
[»] scaffold0208 (2 HSPs)
scaffold0208 (171-224)||(6096-6149)
scaffold0208 (171-217)||(11976-12022)
[»] scaffold0363 (1 HSPs)
scaffold0363 (171-226)||(1131-1185)
[»] scaffold1147 (1 HSPs)
scaffold1147 (249-338)||(957-1046)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 211 - 470
Target Start/End: Original strand, 8549694 - 8549949
Alignment:
Q  211 aaaatattccaacaattacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattct 310  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||  ||    | |||||||||||||||||    
T  8549694 aaaatattccaacaattacaagatgtgcgcaaatgtggttttgataaggattggttggatcgtgttgagatgc--gcaaaatatcctgatttacaattct 8549791  T
Q  311 ctcaaaatgcattgcaaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtgga 410  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8549792 ctcaaaatgcattgcaaaagttcttggattcccagaagcgtgtaaccaaggaagttgaagagatgcgtttatagattaacattttaaatcaacatgtgga 8549891  T
Q  411 agatattaagcacatcactaacctttccttttctcattcttgtgttcaactattggccat 470  Q
    |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549892 agatcttaag--catcactaacctttccttttctcattcttgtgttcaactattggccat 8549949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 225 - 422
Target Start/End: Complemental strand, 8538582 - 8538390
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8538582 attacaagatgtgcgaaaatgtggttttgataaggattggttggatcgtgttgaaaagcgcgctttgtttcctgatttacaattctctcaaaatgcattg 8538483  T
Q  325 caaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    |||||| | ||||||||||||||      ||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  8538482 caaaagatattggattcccagca-----aaacaaaggaagctgaagagatgcgtttacagattaacattttaaatcaacatgtggaagatcttaagca 8538390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 226 - 414
Target Start/End: Original strand, 28038174 - 28038362
Alignment:
Q  226 ttacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgc 325  Q
    |||||||||||||||| |||| |||| ||||| |||||||| ||| |||| |||||||  |||||||||||||||||| |||||||||||||||||||||    
T  28038174 ttacaagatgtgcgcagatgtagtttcgataaagattggtttgatggtgtcgaaaagcgtgctttgtttcctgatttaaaattctctcaaaatgcattgc 28038273  T
Q  326 aaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagat 414  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||| ||||||||    
T  28038274 aaaagctattggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttaaaaattaacatttttaatcaacatctggaagat 28038362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 225 - 422
Target Start/End: Original strand, 27954837 - 27955034
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||||||||    
T  27954837 attacaagatgtgcgcagatgtggttttgataaagattggttggatggtgttgaaaagcacgctttgtcttatgaattacaattctctcaaaatgcattg 27954936  T
Q  325 caaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    |||||  | |||| |||| |||||| ||| ||||| |||||||||||||||||||||  ||| |||||||| ||||||||| |||||||| |||||||    
T  27954937 caaaaactgttggtttccgagcagcatgtcaccaaagaagttgaagagatgcgtttaaagataaacatttttaatcaacatctggaagatcttaagca 27955034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 8549590 - 8549698
Alignment:
Q  3 agtgcaattaggaacaggcaaaacataactttcttgcatgagttcaaagattcttaccaaatcgccctatgcaaaacaatggactgtgcaactgaaggag 102  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549590 agtgcaattaggaacaggcaaaacataaatttcttgcatgagttcaaagattcttaccaaatcgccctatgcaaaacaatggactgtgcaactgaaggag 8549689  T
Q  103 acacaaaat 111  Q
    |||||||||    
T  8549690 acacaaaat 8549698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 260 - 422
Target Start/End: Original strand, 30994030 - 30994192
Alignment:
Q  260 attggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagcagcgtgtaaccaa 359  Q
    ||||||||||  |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||    
T  30994030 attggttggacagtgtcgaaaagcgtgctttatttcctgatttacaattctctcaaaatgcattgcaaaagctgttgaattcccaacagcgtgtaaccaa 30994129  T
Q  360 ggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||| ||||||| |||||||    
T  30994130 ggaagttgaagagatgcgtttaaagattaacatttttaatcaacatgaggaagatcttaagca 30994192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 225 - 422
Target Start/End: Original strand, 28152313 - 28152510
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    ||||||||||||||| | || ||  ||||||||||| |||||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  28152313 attacaagatgtgcgtagatttccgtttgataaggagtggttggatgatgttgaaatgcgcgctttgtttcctgatttacaattctctcaaaatgcattg 28152412  T
Q  325 caaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    |||||  | ||||||||| |||||||||| || || |||||||||||||||||||||  ||| |||||||| ||||||||| | |||||| |||||||    
T  28152413 caaaaactattggattccgagcagcgtgtcacgaaagaagttgaagagatgcgtttaaagataaacatttttaatcaacatcttgaagatcttaagca 28152510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 225 - 422
Target Start/End: Original strand, 27920868 - 27921065
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||| |||||||| || ||| |||||||||||| |||||||||||    
T  27920868 attacaagatgtgcgcagatgtggttttgataaagattggttggatggtgttgaaaagcgcgctttgtctcatgaattacaattctctgaaaatgcattg 27920967  T
Q  325 caaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    ||||||   | | ||||| | |||| ||| ||||||||||||||||| || |||||   ||| ||||||||||||||||||||||||||| |||||||    
T  27920968 caaaagccatcgtattccaaacagcatgtcaccaaggaagttgaagatattcgtttgaagataaacattttaaatcaacatgtggaagatcttaagca 27921065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 279 - 422
Target Start/End: Complemental strand, 28680679 - 28680536
Alignment:
Q  279 aaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgt 378  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||||| | |||||||||||||||| |||  ||||||||||||||||||| |||    
T  28680679 aaagcgcgctttgtttcctgatttacaattctctcaaagtgcaatgcaaaagctattggattcccagcagcatgtcgccaaggaagttgaagagatccgt 28680580  T
Q  379 ttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    ||   ||| ||||||||||||||||||||||||||| |||||||    
T  28680579 ttgaagataaacattttaaatcaacatgtggaagatcttaagca 28680536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 17743977 - 17743864
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    ||||||||||||||||| || || |||||||||| | ||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||||||||    
T  17743977 attacaagatgtgcgcagatttccttttgataagaaatggttggatggtgttgaaaagcgcgctttgtttcctggtttacaagtctctcaagatgcattg 17743878  T
Q  325 caaaagttcttgga 338  Q
    ||||| || |||||    
T  17743877 caaaaattgttgga 17743864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 19045297 - 19045184
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    ||||||||||||||||| || || |||||||||| | ||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||||||||    
T  19045297 attacaagatgtgcgcagatttccttttgataagaaatggttggatggtgttgaaaagcgcgctttgtttcctggtttacaagtctctcaagatgcattg 19045198  T
Q  325 caaaagttcttgga 338  Q
    ||||| || |||||    
T  19045197 caaaaattgttgga 19045184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 27777202 - 27777324
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||| |||||||||| |  ||||||||| ||||| ||||||||||||||  ||||||     
T  27777202 attacaagatgtacgcagatgtggttttgataaagattggttggatggtgttgaaaaacgtgctttgttttctgatatacaattctctcaagttgcatta 27777301  T
Q  325 caaaagttcttggattcccagca 347  Q
    |||||  | ||||||||||||||    
T  27777302 caaaaactattggattcccagca 27777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 28187320 - 28187433
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||  | ||||||| | ||||||||| |||| ||||||| |||||||| ||||||||    
T  28187320 attacaagatgtgcgcaaatttggttttgataaggaatggttggatgatattgaaaaacgcgctttgttgcctggtttacaagtctctcaagatgcattg 28187419  T
Q  325 caaaagttcttgga 338  Q
    ||||| || |||||    
T  28187420 caaaaattgttgga 28187433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 11421887 - 11421989
Alignment:
Q  227 tacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgca 326  Q
    ||||||||||||| | || || |||||| || || ||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||    
T  11421887 tacaagatgtgcgtagatttccttttgacaaagaatggttggatggtgttgaaaagcgcgctttgtttcctggtttacaagtctctcaagatgcattgca 11421986  T
Q  327 aaa 329  Q
    |||    
T  11421987 aaa 11421989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 28057846 - 28057959
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||  | ||||||| | || |||||| |||| ||||||| |||||||| ||||||||    
T  28057846 attacaagatgtgcgcaaatttggttttgataaggaatggttggatgatattgaaaaacgcgttttgttgcctggtttacaagtctctcaagatgcattg 28057945  T
Q  325 caaaagttcttgga 338  Q
    ||||| || |||||    
T  28057946 caaaaattgttgga 28057959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 28068271 - 28068384
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||  | ||||||| | || |||||| |||| ||||||| |||||||| ||||||||    
T  28068271 attacaagatgtgcgcaaatttggttttgataaggaatggttggatgatattgaaaaacgcgttttgttgcctggtttacaagtctctcaagatgcattg 28068370  T
Q  325 caaaagttcttgga 338  Q
    ||||| || |||||    
T  28068371 caaaaattgttgga 28068384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 422
Target Start/End: Original strand, 28136984 - 28137175
Alignment:
Q  231 agatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaag 330  Q
    ||||| |||||| | | ||||||||||||||||||||||| |||| |||| ||  ||| ||||||||||| ||||| | |||||| | ||  |||||||     
T  28136984 agatgcgcgcaactttggttttgataaggattggttggatagtgtcgaaaggcgggctatgtttcctgatatacaaatatctcaagacgccatgcaaaaa 28137083  T
Q  331 ttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    || ||||||||| |||| |   | |||||||||||||||| | ||| ||||  |||  | ||||||| |||||||||||||||| |||||||    
T  28137084 ttattggattccaagcaacaaattaccaaggaagttgaagtgttgcatttaaagatagagattttaagtcaacatgtggaagatcttaagca 28137175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 422
Target Start/End: Original strand, 27356925 - 27357099
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagca 347  Q
    ||||||||||||||||||||||| |||||||||  |  ||||||||| | ||| || || |||||||| |||||||||||||  | ||||||||| ||||    
T  27356925 gttttgataaggattggttggatagtgttgaaagacgtgctttgttttcggatataaaagtctctcaagatgcattgcaaaaactgttggattccaagca 27357024  T
Q  348 gcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
     |  ||  |||| |||||||||| | |||||||    ||  ||||||||| |||||||||||||||| |||||||    
T  27357025 acaagtctccaaagaagttgaagtgttgcgtttgaaaatagacattttaagtcaacatgtggaagatcttaagca 27357099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24644023 - 24644078
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  24644023 tatttgcccacataataatattggaatataataaaataataaaatattccaacaat 24644078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 26109775 - 26109643
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagca 347  Q
    ||||||||||||||||||||||| |||| |||| ||  |||||||| |||||| ||||| | || ||| |||| ||||| || || ||||||||| ||||    
T  26109775 gttttgataaggattggttggatggtgtcgaaaggcgggctttgttccctgatatacaagtatcacaagatgccttgcagaaattattggattccaagca 26109676  T
Q  348 gcgtgtaaccaaggaagttgaagagatgcgttt 380  Q
     |  || |||||||| ||||||| | |||||||    
T  26109675 acaggttaccaaggatgttgaagcgttgcgttt 26109643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 26204067 - 26203935
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagca 347  Q
    ||||||||||||||||||||||| |||| |||| ||  |||||||| |||||| ||||| | || ||| |||| ||||| || || ||||||||| ||||    
T  26204067 gttttgataaggattggttggatggtgtcgaaaggcgggctttgttccctgatatacaagtatcacaagatgccttgcagaaattattggattccaagca 26203968  T
Q  348 gcgtgtaaccaaggaagttgaagagatgcgttt 380  Q
     |  || |||||||| ||||||| | |||||||    
T  26203967 acaggttaccaaggatgttgaagcgttgcgttt 26203935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10238745 - 10238800
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||    
T  10238745 tatttgcccacataatgatattggaatattattaaataataaaatattccaacaat 10238800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10761183 - 10761237
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  10761183 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 10761237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 11840258 - 11840313
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||    
T  11840258 tatttgcccacataatgatattggaatattattaaataataaaatattccaacaat 11840313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 370
Target Start/End: Complemental strand, 28508503 - 28508360
Alignment:
Q  227 tacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgca 326  Q
    ||||||||| |||||  | | ||||||||||||||||||||||| ||||||| | || |||||||||||||||  || || | || ||| |||| |||||    
T  28508503 tacaagatgcgcgcagctttggttttgataaggattggttggatggtgttgagaggcgcgctttgtttcctgaaataaaagtgtcccaagatgccttgca 28508404  T
Q  327 aaagttcttggattcccagcagcgtgtaaccaaggaagttgaag 370  Q
    ||| || || |||||| |||| |  || |||||||| |||||||    
T  28508403 aaatttattagattccaagcaacaggttaccaaggatgttgaag 28508360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 9586545 - 9586598
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  9586545 tatttgcccacataatgatattggaatataataaaa-tataaaatattccaacaa 9586598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 17056324 - 17056390
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaattacaagatgtg 237  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||  ||||| |||||    
T  17056324 tatttgcccacataatgatattggaatattattaaataataaaatattccaacatctacaacatgtg 17056390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 8538089 - 8538048
Alignment:
Q  424 atcactaacctttccttttctcattcttgtgttcaactattg 465  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  8538089 atcaccaacctttccttttctcattcttgtgttcaactattg 8538048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 10769502 - 10769554
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  10769502 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 10769554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 23138949 - 23139001
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  23138949 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 23139001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 30051633 - 30051685
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  30051633 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 30051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 38456083 - 38456135
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  38456083 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 38456135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 28163339 - 28163423
Alignment:
Q  254 ataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttgga 338  Q
    ||||||| |||||||||  | | ||||||| ||||||||| |||| ||||||| |||||||| ||||||||||||| || |||||    
T  28163339 ataaggaatggttggatgatatcgaaaagcgcgctttgttgcctggtttacaagtctctcaagatgcattgcaaaaattgttgga 28163423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 38449596 - 38449650
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| || ||||||||||||||||    
T  38449596 tatttgcccacataatgatattggaatataat-aaataaaaaaatattccaacaat 38449650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 42191753 - 42191808
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||| ||||||    
T  42191753 tatttgcccacataatgatattggaatattattaaataataaaatattctaacaat 42191808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 49157306 - 49157252
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  49157306 tattttcccacataatgatattggaatataat-aaataataaaatattccaacaat 49157252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 49151239 - 49151186
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  49151239 tattttcccacataatgatattggaatataat-aaataataaaatattccaacaa 49151186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 55003934 - 55003988
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    |||||| || ||||||||||||||||||| || ||| ||||||||||||||||||    
T  55003934 tatttgtccacataatgatattggaatattattaaataataaaatattccaacaa 55003988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 8331414 - 8331362
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||||||||||    
T  8331414 tatttgtccacataatgatattggaatataat-aaataataaaatattccaaca 8331362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 10244867 - 10244920
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||| ||||| || ||| |||||||||||||||||    
T  10244867 tatttgcccacataatgatattgaaatattattaaataataaaatattccaaca 10244920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 42197695 - 42197748
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||| ||||    
T  42197695 tatttgcccacataatgatattggaatattattaaataataaaatattctaaca 42197748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 26138659 - 26138607
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgat 300  Q
    ||||||||||||||||||||||| |||| |||| ||  |||||||||||||||    
T  26138659 gttttgataaggattggttggatggtgtcgaaaggcgggctttgtttcctgat 26138607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 27430449 - 27430393
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaa 281  Q
    ||||||||||||||| | || || |||||||||||| ||||||||| ||||||||||    
T  27430449 attacaagatgtgcgtagatttccttttgataaggaatggttggatggtgttgaaaa 27430393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 28964507 - 28964473
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaa 205  Q
    ||||||||| |||||||||||||||||||||||||    
T  28964507 tatttgcccacataatgatattggaatataataaa 28964473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 11846510 - 11846562
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||    
T  11846510 tatttgcccacataatgatat-ggaatattattaaataataaaatattccaaca 11846562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 26429950 - 26430003
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||| |||||| || ||| ||||||| |||||||||    
T  26429950 tatttgcccacataatgatattagaatattattaaataataaaacattccaaca 26430003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 422
Target Start/End: Complemental strand, 27458270 - 27458097
Alignment:
Q  249 ttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagcag 348  Q
    ||||||||||| |||||||||| || | ||||  |  || |||||| | ||| ||||| |||||||||||| ||| |||||  | ||||||||| ||||     
T  27458270 ttttgataaggcttggttggatagtctcgaaagacgtgcattgttttcggatatacaagtctctcaaaatgaatttcaaaaactgttggattccaagcaa 27458171  T
Q  349 cgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    |  ||  ||||||||||||||| | |||||||   |||  || | |||| |||| ||||||||||| |||||||    
T  27458170 caagtctccaaggaagttgaagtgttgcgttttaagatagacgtcttaagtcaaaatgtggaagatcttaagca 27458097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 26232119 - 26232067
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgat 300  Q
    ||||||||||||||||||||||| |||| |||| || | |||||| |||||||    
T  26232119 gttttgataaggattggttggatggtgtcgaaaggcgcactttgtgtcctgat 26232067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 19763 - 19874
Alignment:
Q  227 tacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgca 326  Q
    |||||||||||||||||||| ||||||||||| | |||||||||  ||| ||||||| |||||||||||||| || |||| |||||||| ||||||||||    
T  19763 tacaagatgtgcgcaaatgtggttttgataagaaatggttggatgatgtggaaaagcgcgctttgtttcctggttcacaagtctctcaagatgcattgca 19862  T
Q  327 aaagttcttgga 338  Q
    ||| || |||||    
T  19863 aaaattgttgga 19874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 422
Target Start/End: Original strand, 22400839 - 22401013
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagca 347  Q
    ||||||||||||||||||||||| |||||||||  |  ||||||||| | ||| || || |||||||| |||||||||||||  | ||||||||| ||||    
T  22400839 gttttgataaggattggttggatagtgttgaaagacgtgctttgttttcggatataaaagtctctcaagatgcattgcaaaaactgttggattccaagca 22400938  T
Q  348 gcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
     |  ||  |||| |||||||||| | |||||||    ||  ||||||||| |||||||||||||||| |||||||    
T  22400939 acaagtctccaaagaagttgaagtgttgcgtttgaaaatagacattttaagtcaacatgtggaagatcttaagca 22401013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 422
Target Start/End: Original strand, 22966016 - 22966190
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagca 347  Q
    ||||||||||||||||||||||| |||||||||  |  ||||||||| | ||| || || |||||||| |||||||||||||  | ||||||||| ||||    
T  22966016 gttttgataaggattggttggatagtgttgaaagacgtgctttgttttcggatataaaagtctctcaagatgcattgcaaaaactgttggattccaagca 22966115  T
Q  348 gcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
     |  ||  |||| |||||||||| | || ||||    ||  ||||||||| |||||||||||||||| |||||||    
T  22966116 acaagtctccaaagaagttgaagtgttgggtttgaaaatagacattttaagtcaacatgtggaagatcttaagca 22966190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 422
Target Start/End: Original strand, 22792543 - 22792717
Alignment:
Q  248 gttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttggattcccagca 347  Q
    ||||||||||||||||||||||| |||||||||  |  ||||||||| | ||| || || |||||||| |||||||||||||  | ||||||||| | ||    
T  22792543 gttttgataaggattggttggatagtgttgaaagacgtgctttgttttcggatataaaagtctctcaagatgcattgcaaaaactgttggattccaatca 22792642  T
Q  348 gcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
     |  ||  |||| |||||||||| | || ||||    ||  ||||||||| |||||||||||||||| |||||||    
T  22792643 acaagtctccaaagaagttgaagtgttgtgtttgaaaatagacattttaagtcaacatgtggaagatcttaagca 22792717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 30964954 - 30964900
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  30964954 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 30964900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 35439903 - 35439957
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  35439903 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 35439957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 11049025 - 11049078
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||    
T  11049025 tatttgcccacataataatattggaatataattaaataataaaatattccaaca 11049078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 31002003 - 31001951
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  31002003 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 31001951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 36750041 - 36749988
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  36750041 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 36749988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 13461667 - 13461612
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||| ||||||    
T  13461667 tatttgcccacataatgatattggaatattattaaataataaaatattctaacaat 13461612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 19879221 - 19879170
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaa 222  Q
    ||||| ||| |||||||||||||||||||||||||| | |||||||||||||    
T  19879221 tattttcccacataatgatattggaatataataaaatattaaaatattccaa 19879170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 35085212 - 35085267
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||| |||||||||||    
T  35085212 tatttgcccacataatgatattggaatattattaaataataaaacattccaacaat 35085267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 13455726 - 13455672
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||| |||||    
T  13455726 tatttgcccacataatgatattggaatattattaaataataaaatattctaacaa 13455672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 23343190 - 23343140
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattcca 221  Q
    |||||| || |||||||||||| ||||||||||||| ||||||||||||||    
T  23343190 tatttgtccacataatgatattagaatataataaaataataaaatattcca 23343140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 13150222 - 13150274
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||    
T  13150222 tatttgcccacataatgatattgaaatataat-aaataataaaatattccaaca 13150274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 23283870 - 23283821
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattcc 220  Q
    |||||| || ||||||||||||| |||||||||||| |||||||||||||    
T  23283870 tatttgtccacataatgatattgaaatataataaaataataaaatattcc 23283821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 44717342 - 44717390
Alignment:
Q  175 tgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  44717342 tgcccacataatgatattggaatataataaatc-ataaaatattccaaca 44717390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 8021521 - 8021610
Alignment:
Q  249 ttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttgga 338  Q
    |||||||||||| |||||||||  | | |||||||  |||||||||| || ||  ||| |||||||| ||||||||||||| || |||||    
T  8021521 ttttgataaggaatggttggatgatatcgaaaagcgtgctttgtttcatggttcgcaagtctctcaagatgcattgcaaaaattgttgga 8021610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 35091185 - 35091238
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||| ||| ||||||||||||||||||| || ||| ||||||| |||||||||    
T  35091185 tatttacccacataatgatattggaatattattaaataataaaacattccaaca 35091238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 2399 - 2512
Alignment:
Q  225 attacaagatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattg 324  Q
    |||||||||| |||| | || || ||||||||| || ||||||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||||  ||    
T  2399 attacaagatatgcgtagatttccttttgataaagaatggttggatggtgttgaaaagctcgccttgtttcctggtttacaagtctctcaaaatgcgctg 2498  T
Q  325 caaaagttcttgga 338  Q
    ||||| || |||||    
T  2499 caaaattttttgga 2512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 17581231 - 17581176
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  17581231 tatttgcccacataatgatattggaatataattaaataataaaatattccaacaat 17581176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 30906113 - 30906166
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  30906113 tatttgcccacataatgatattgaaatataataaaataataaaatattccaaca 30906166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 8651336 - 8651390
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  8651336 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 8651390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 25343254 - 25343201
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  25343254 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 25343201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 6096937 - 6096887
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaa 222  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  6096937 tatttgcccacataatgatattggaatataat-aaataataaaatattccaa 6096887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 21771097 - 21771151
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||||||||||||    
T  21771097 tatttgtccacataatgatattggaatataat-aaataataaaatattccaacaat 21771151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 4580854 - 4580907
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||  |||||||||||||||||    
T  4580854 tatttgcccacataatgatattggaatattattaattaataaaatattccaaca 4580907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 21191403 - 21191457
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||    
T  21191403 tatttgcccacataatgatat-ggaatattattaaataataaaatattccaacaat 21191457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 32030014 - 32030053
Alignment:
Q  186 tgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  32030014 tgatattggaatataat-aaataataaaatattccaacaat 32030053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 173422 - 173475
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  173422 tatttgcccacataataatattggaatataataaaataataaaatattccaaca 173475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 8093379 - 8093431
Alignment:
Q  172 atttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  8093379 atttgcccggataatgatattggaatataattaaataataaaatattccaaca 8093431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 25382068 - 25382123
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||    
T  25382068 tatttgcccacataatgatattggaatattattaaataataaaatattccaacaat 25382123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 31057671 - 31057617
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  31057671 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 31057617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 1077871 - 1077818
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  1077871 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 1077818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 31051171 - 31051119
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  31051171 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 31051119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 50305824 - 50305771
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  50305824 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 50305771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 12184129 - 12184184
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||| ||||| || ||| |||||||||||||||||||    
T  12184129 tatttgcccacataatgatattgaaatattattaaataataaaatattccaacaat 12184184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 34739613 - 34739560
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  34739613 tattttcccacataatgatattggaatataat-aaataataaaatattccaacaa 34739560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 25388035 - 25388088
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||  |||||||||||||||||    
T  25388035 tatttgcccacataatgatattggaatattattaattaataaaatattccaaca 25388088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24927301 - 24927356
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||  ||||||||||||| ||| | |||||||||||||||||    
T  24927301 tatttgcccacataatgtcattggaatataattaaatattaaaatattccaacaat 24927356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 44409627 - 44409592
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaa 206  Q
    ||||||||| ||||||||||||||||||||||||||    
T  44409627 tatttgcccacataatgatattggaatataataaaa 44409592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 25275579 - 25275625
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatat 217  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||||||    
T  25275579 tatttgcccacataatgatattggaatattattaaataataaaatat 25275625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 33458439 - 33458496
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaatta 228  Q
    |||||| || |||| ||||||  ||||||||| ||| |||||||||||||||||||||    
T  33458439 tatttgtccacatactgatatcagaatataattaaataataaaatattccaacaatta 33458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 13900 - 13845
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  13900 tattttcccacataatgatattggaatataattaaataataaaatattccaacaat 13845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 39727817 - 39727871
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  39727817 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 39727871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 1883370 - 1883424
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||||||||||||    
T  1883370 tatttgcccgcataatattattggaatataattaaataataaaatattccaacaa 1883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 36818599 - 36818546
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  36818599 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 36818546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 32890515 - 32890459
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaatt 227  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||| ||||||||||||    
T  32890515 tatttgcccacataatgatattggaatattattaaataataaaacattccaacaatt 32890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 32896639 - 32896584
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||| |||||||||||    
T  32896639 tatttgcccacataatgatattggaatattattaaataataaaacattccaacaat 32896584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 42033424 - 42033372
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  42033424 tatttacccgcataatgatattgaaatataat-aaataataaaatattccaaca 42033372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 22220260 - 22220313
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||||||  |  |||||||||||||||||||    
T  22220260 tatttgcccacataatgatattggaatataat--agtaataaaatattccaacaat 22220313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 14417588 - 14417534
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||| ||| |||||||||||||| ||||||| ||| |||||||||||||||||||    
T  14417588 tattttcccacataatgatattggtatataat-aaataataaaatattccaacaat 14417534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 10699656 - 10699622
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaa 205  Q
    ||||||||| |||||||||||||||||||||||||    
T  10699656 tatttgcccacataatgatattggaatataataaa 10699622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 42993532 - 42993585
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    |||||||||  |||||||||||||||||| || ||| ||||||| |||||||||    
T  42993532 tatttgcccatataatgatattggaatattattaaataataaaacattccaaca 42993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 351414 - 351360
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  351414 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 351360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 422
Target Start/End: Complemental strand, 8692483 - 8692292
Alignment:
Q  231 agatgtgcgcaaatgtcgttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaag 330  Q
    ||||| |||||| | | ||||||||||||||||||||||| |||| ||||  |  ||| ||||||||||| ||||| | || ||| | ||  ||||||      
T  8692483 agatgcgcgcaactttggttttgataaggattggttggatagtgtcgaaagacgggctatgtttcctgatatacaaatatcgcaagacgccatgcaaaca 8692384  T
Q  331 ttcttggattcccagcagcgtgtaaccaaggaagttgaagagatgcgtttattgattaacattttaaatcaacatgtggaagatattaagca 422  Q
    || ||||||||| |||| |  || |||||||||||||||| | ||| |||   |||  | ||||||| |||||||||||| ||| |||||||    
T  8692383 ttattggattccaagcaacaggttaccaaggaagttgaagtgttgcatttgaagatagagattttaagtcaacatgtggaggatcttaagca 8692292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 35153061 - 35153115
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||| ||||||||||||| ||| |||||||||||||||||||    
T  35153061 tatttgcccacataatgacattggaatataat-aaataataaaatattccaacaat 35153115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 5979709 - 5979762
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||| ||||| || ||| |||||||||||||||||    
T  5979709 tatttgcccacataatgatattgaaatattattaaataataaaatattccaaca 5979762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 18667737 - 18667790
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||| | || ||||||||||||||||||| ||| |||||||||||||||||    
T  18667737 tatttgcacacacaatgatattggaatataattaaataataaaatattccaaca 18667790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 26383296 - 26383240
Alignment:
Q  171 tatttgcccgcataatgatattggaatataat-aaaacaataaaatattccaacaat 226  Q
    ||||||||| || |||||||||| |||||||| |||| |||||||||||||||||||    
T  26383296 tatttgcccacaaaatgatattgaaatataattaaaataataaaatattccaacaat 26383240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 339008 - 338955
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||| ||||||||||||| |||||||  ||| ||||||||||||||||||    
T  339008 tatttgcccacataatgatattgaaatataa-gaaataataaaatattccaacaa 338955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 3811701 - 3811757
Alignment:
Q  171 tatttgcccgcataatgatat--tggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||  ||||||||||||||  |||||||||||||||||||    
T  3811701 tatttgcccacataatgatatattggaatataataaat-aataaaatattccaacaat 3811757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 28421491 - 28421537
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatat 217  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||||||    
T  28421491 tatttgcccacataatgatattggaatattattaaataataaaatat 28421537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 3817843 - 3817895
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||  ||||||||||||| |||||||| ||| |||||||||||||||||    
T  3817843 tatttgcctacataatgatattgaaatataat-aaataataaaatattccaaca 3817895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 35148552 - 35148596
Alignment:
Q  181 cataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||    
T  35148552 cataatgatattagaatataat-aaataataaaatattccaacaat 35148596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 7608058 - 7608022
Alignment:
Q  182 ataatgatattggaatataataaaacaataaaatatt 218  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  7608058 ataatgatattggaatataattaaataataaaatatt 7608022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 32094754 - 32094809
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||    
T  32094754 tatttgcccacataatgatattggaatattattaaataataaaatattccaacaat 32094809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 32097554 - 32097608
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||    
T  32097554 tatttgcccacataatgatattggaatattattaaataataaaatattccaacaa 32097608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 12692813 - 12692866
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  12692813 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 12692866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 30384916 - 30384969
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    |||||| || ||||||||||| |||||||||||||| |||||||||||||||||    
T  30384916 tatttgtccacataatgatatcggaatataataaaataataaaatattccaaca 30384969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 30771910 - 30771854
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaac-aataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||    
T  30771910 tatttgcccacataatgatattgaaatatagtaaaacaaataaaatattccaacaat 30771854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 26509485 - 26509430
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| | |||||| | ||||||||||||||| |||||||||||||||||||    
T  26509485 tatttgcccacttaatgacaatggaatataataaaataataaaatattccaacaat 26509430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 28525918 - 28525972
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  28525918 tattttcccacataatgatattggaatataat-aaataataaaatattccaacaat 28525972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 41296906 - 41296852
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  41296906 tatttgcccacataatgatattgtaatataataaaa-tataaaatattccaacaat 41296852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 7390080 - 7390133
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  7390080 tattttcccacataatgatattggaatataat-aaataataaaatattccaacaa 7390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 28532014 - 28532066
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  28532014 tattttcccacataatgatattggaatataat-aaataataaaatattccaaca 28532066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 12686711 - 12686757
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatat 217  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||||||    
T  12686711 tatttgcccacataatgatattggaatattattaaataataaaatat 12686757  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 33753763 - 33753815
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaac 223  Q
    ||||| ||| ||||||||||||| |||||||| ||| ||||||||| ||||||    
T  33753763 tatttacccacataatgatattgaaatataattaaataataaaataatccaac 33753815  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10733882 - 10733936
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||    
T  10733882 tatttgcccacataatgatattggaatataataaaa-tataaaatattccaacaat 10733936  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10947651 - 10947705
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||    
T  10947651 tatttgcccacataatgatattggaatataataaaa-tataaaatattccaacaat 10947705  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 26957336 - 26957390
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  26957336 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 26957390  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 48166805 - 48166751
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  48166805 tatttgcccacataatgatattggaatataat-aaataataaaatattccaacaat 48166751  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 10739869 - 10739922
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  10739869 tatttgcccacataatgatattggaatataataaaa-tataaaatattccaacaa 10739922  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 10953638 - 10953691
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaa 225  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  10953638 tatttgcccacataatgatattggaatataataaaa-tataaaatattccaacaa 10953691  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 6257737 - 6257789
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  6257737 tatttgcccacataatgatattggaatataataaaa-tataaaatattccaaca 6257789  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 26972087 - 26972139
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  26972087 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 26972139  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 48160586 - 48160534
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  48160586 tatttgcccacataatgatattggaatataat-aaataataaaatattccaaca 48160534  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 532117 - 532170
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||  ||||||||||||||||||| || ||| |||||||||||||||||    
T  532117 tatttgcctacataatgatattggaatattattaaataataaaatattccaaca 532170  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 24287614 - 24287561
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||| ||||| || ||| |||||||||||||||||    
T  24287614 tatttgcccacataatgatattgaaatattattaaataataaaatattccaaca 24287561  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 50168210 - 50168167
Alignment:
Q  183 taatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||    
T  50168210 taatgttattggaatataattaaataataaaatattccaacaat 50168167  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 33458725 - 33458774
Alignment:
Q  174 ttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    |||||| ||||| |||||||||||||||| ||| |||||||||||||||||    
T  33458725 ttgcccacataaggatattggaatataat-aaataataaaatattccaaca 33458774  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 33461850 - 33461899
Alignment:
Q  174 ttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    |||||| ||||| |||||||||||||||| ||| |||||||||||||||||    
T  33461850 ttgcccacataaagatattggaatataat-aaataataaaatattccaaca 33461899  T

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Target: scaffold1114 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 690 - 637
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  690 tattttcccacataatgatattggaatataattaaataataaaatattccaaca 637  T

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Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 6149 - 6096
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaaca 224  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  6149 tatttgcccacataatgatattggaatattattaaataataaaatattccaaca 6096  T

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Target: scaffold0208; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 12022 - 11976
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatat 217  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||||||    
T  12022 tatttgcccacataatgatattggaatattattaaataataaaatat 11976  T

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Target: scaffold0363 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 1131 - 1185
Alignment:
Q  171 tatttgcccgcataatgatattggaatataataaaacaataaaatattccaacaat 226  Q
    ||||| ||| |||||||||||||| ||||||| ||| |||||||||||||||||||    
T  1131 tattttcccacataatgatattggtatataat-aaataataaaatattccaacaat 1185  T

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Target: scaffold1147 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 957 - 1046
Alignment:
Q  249 ttttgataaggattggttggatcgtgttgaaaagcacgctttgtttcctgatttacaattctctcaaaatgcattgcaaaagttcttgga 338  Q
    |||||| |||||| |||| ||| |||| ||||| ||| |||||||||||  ||||||| |||||| | || |||||||||| || |||||    
T  957 ttttgacaaggatcggttagatggtgtcgaaaaacacactttgtttcctagtttacaagtctctctagatacattgcaaaaattgttgga 1046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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