View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_84 (Length: 378)
Name: NF10954A_low_84
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 34 - 358
Target Start/End: Complemental strand, 35894895 - 35894571
Alignment:
| Q |
34 |
ttattctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaatgaatacttatactctaaaatctttaaagtcaat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35894895 |
ttattctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaatgaatacttatactctaaaatctttaaagtcaat |
35894796 |
T |
|
| Q |
134 |
gaaaaactttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaattatgatggtaaaatggaaaatgataaagccttagta |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35894795 |
gaaaaactttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaattatgatggtaaaatggaaaatgataaagacttagta |
35894696 |
T |
|
| Q |
234 |
ttatagattgtcgactccatgttggttggtatgagaagctcgatggagtatttaagtttggtcatatgaaggtttgtgcaacggtaaagttgttgtcccg |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35894695 |
ttatagattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttgctcatatgaaggtttgtgcaacggtaaagttgttgtcctg |
35894596 |
T |
|
| Q |
334 |
tgactgaaaagtcgcgggtttaaga |
358 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35894595 |
tgactgaaaagtcgcgggtttaaga |
35894571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 2436059 - 2436015
Alignment:
| Q |
309 |
gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
2436059 |
gtgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
2436015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 2435951 - 2435909
Alignment:
| Q |
311 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
2435951 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
2435909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 10378891 - 10378858
Alignment:
| Q |
309 |
gtgcaacggtaaagttgttgtcccgtgactgaaa |
342 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
10378891 |
gtgcaacggtaaagttgttgtcacgtgactgaaa |
10378858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 17470512 - 17470480
Alignment:
| Q |
309 |
gtgcaacggtaaagttgttgtcccgtgactgaa |
341 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
17470512 |
gtgcaacggtaaagttgttgtcacgtgactgaa |
17470480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 35117930 - 35117890
Alignment:
| Q |
313 |
aacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
35117930 |
aacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
35117890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 19265786 - 19265828
Alignment:
| Q |
311 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
19265786 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
19265828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 19266419 - 19266463
Alignment:
| Q |
309 |
gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
19266419 |
gtgcaacggtaaagttgttgtcatgtgactgaaaggtcgtgggtt |
19266463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 26573120 - 26573162
Alignment:
| Q |
311 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
26573120 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
26573162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 45620993 - 45620951
Alignment:
| Q |
311 |
gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt |
353 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
45620993 |
gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt |
45620951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University