View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_85 (Length: 376)
Name: NF10954A_low_85
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_85 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 31784437 - 31784801
Alignment:
| Q |
7 |
aaagcagtctgtctcaagccatcaagacaggaaaaatcacagactcgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcagg |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31784437 |
aaagcagtttgtctcaagccatcaagacaggaaaaatcacagactcgcatggacgagaagttagtgcaaacaatgcaatatttgttttttctttctcagg |
31784536 |
T |
|
| Q |
107 |
ttgccaaaatagtttgatgcaaacaagggaaccttccaactattatgaggaaagaataatgagtgtaaggggcggaggtatcaagataaaagttgaacat |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31784537 |
ttaccaaaatagtttgatgcaaacaagggaaccttccaactattctgaggaaagaatgctgagtgtacggggcggaggtatcaagatcaaagttgaacat |
31784636 |
T |
|
| Q |
207 |
atggttagagacatcagaaacaaaagcactggtgtagctaacaattcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtg |
306 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31784637 |
atggttagagacatcagaaaccaaagcatcggtgtacctaacaattcaataaacatcattcctaatctaaatttcataaacaaacgaaaattgattggtg |
31784736 |
T |
|
| Q |
307 |
acaatgaacttcatgatccctatttacttgcagatacggctaaaaaggcgcatacaacaccaaac |
371 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||||| ||||||||| ||| ||||||||| ||||| |
|
|
| T |
31784737 |
acaatgaacttcacgatccccatttactcgcagatgcggctaaaagggcacatacaacatcaaac |
31784801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 52 - 325
Target Start/End: Complemental strand, 19631893 - 19631618
Alignment:
| Q |
52 |
cgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19631893 |
cgcatggacgagaagttagtgtaaacaatgtactatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta |
19631794 |
T |
|
| Q |
152 |
tgaggaaa--gaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaacaaaagcactggtgtagctaaca |
249 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
19631793 |
tgaggaaaaagaataataagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaaccaaagcatcggtgtagctaaca |
19631694 |
T |
|
| Q |
250 |
attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcatgatcc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19631693 |
attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcacgatcc |
19631618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 19633774 - 19633725
Alignment:
| Q |
7 |
aaagcagtctgtctcaagccatcaagacaggaaaaatcacagactcgcat |
56 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19633774 |
aaagcagtttgtctcaagccatcaagacaggaaaaatcacagactcgcat |
19633725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University