View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_87 (Length: 376)

Name: NF10954A_low_87
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_87
NF10954A_low_87
[»] chr4 (3 HSPs)
chr4 (18-376)||(25109477-25109833)
chr4 (237-292)||(24306401-24306456)
chr4 (24-138)||(3938201-3938315)
[»] chr5 (4 HSPs)
chr5 (24-138)||(39045195-39045309)
chr5 (30-138)||(7280100-7280208)
chr5 (174-348)||(5122762-5122936)
chr5 (27-78)||(41701214-41701265)
[»] chr6 (6 HSPs)
chr6 (199-343)||(28493627-28493771)
chr6 (199-343)||(29806036-29806180)
chr6 (144-339)||(16498311-16498506)
chr6 (144-290)||(31932142-31932288)
chr6 (24-131)||(35164294-35164401)
chr6 (186-349)||(6180221-6180384)
[»] chr1 (2 HSPs)
chr1 (144-284)||(45516559-45516699)
chr1 (144-343)||(44093782-44093981)
[»] chr2 (3 HSPs)
chr2 (144-343)||(35296964-35297163)
chr2 (144-343)||(14688491-14688690)
chr2 (141-292)||(44024042-44024193)
[»] scaffold0015 (1 HSPs)
scaffold0015 (144-343)||(13900-14099)
[»] chr8 (6 HSPs)
chr8 (146-342)||(29259107-29259303)
chr8 (144-265)||(13821265-13821386)
chr8 (174-348)||(13075227-13075401)
chr8 (183-349)||(26706713-26706879)
chr8 (186-343)||(40736660-40736817)
chr8 (7-78)||(28574288-28574360)
[»] chr3 (5 HSPs)
chr3 (144-305)||(49147825-49147986)
chr3 (241-346)||(43367634-43367737)
chr3 (24-138)||(3423246-3423360)
chr3 (24-138)||(22163917-22164031)
chr3 (276-349)||(47158821-47158894)
[»] chr7 (2 HSPs)
chr7 (144-214)||(16768109-16768179)
chr7 (24-138)||(33631415-33631529)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 25109833 - 25109477
Alignment:
Q  18 acatcatgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaa 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||||||||| ||||||||||||||||||    
T  25109833 acataatgcaaaatagactgtcagttgctagtattgatgctcatattcatccatctcgcagaacctgtccacacagcatcagcaaattcagaagtaaaaa 25109734  T
Q  118 ataaatgagaatgactttcatagcactatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  25109733 ataaatgagaatgactttcatagcactatcaaggtttaaagttggcgattagcttcaattgtgtggaaattgcttgctacacagattcccttcttgctgt 25109634  T
Q  218 caaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgt 317  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  25109633 caaccttatcaaagaagattt-aatcagtttcatgtctatactgttcttatccaaaatatcaaaga-cacatgagttctcgaaatttcttccttcaccat 25109536  T
Q  318 tcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatga 376  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||    
T  25109535 tcgctcagagaaggcaatcagtgtgcggattttaggaccaaacttagagcctcgaatga 25109477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 24306456 - 24306401
Alignment:
Q  237 ttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgag 292  Q
    |||||||| |||||||| ||| |||| ||||| |||||||||||||||| ||||||    
T  24306456 ttaaatcactttcatgtttatgttgtgcttatacaaaatatcaaagacctcatgag 24306401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 3938201 - 3938315
Alignment:
Q  24 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 123  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |    
T  3938201 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggt 3938300  T
Q  124 gagaatgactttcat 138  Q
    |||||||| ||||||    
T  3938301 gagaatgagtttcat 3938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 39045195 - 39045309
Alignment:
Q  24 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 123  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  39045195 tgcaaaatagactctcagctgctagtattgatgctcatattcatccatctcatagaacctgtccacacagcatcaacaaattcacaagtaaaaaataaat 39045294  T
Q  124 gagaatgactttcat 138  Q
    |||||||||||||||    
T  39045295 gagaatgactttcat 39045309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 7280208 - 7280100
Alignment:
Q  30 atagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaatgagaat 129  Q
    ||||| || ||||||||||||||||  |||||||||||||||||||||| | || |||||||| ||||| || ||||| ||| |||||| |  |||||||    
T  7280208 atagattgccagttgctagtattgacactcatatttatccatctcatagcacctttccacacaacatcagcatattcacaagaaaaaaacaggtgagaat 7280109  T
Q  130 gactttcat 138  Q
    || ||||||    
T  7280108 gagtttcat 7280100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 348
Target Start/End: Original strand, 5122762 - 5122936
Alignment:
Q  174 aattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaa 273  Q
    |||| |||| |||| ||||||||  ||||||| || ||  | ||||| || ||||| || ||||| ||||| | |||||| ||| ||||||| ||| | |    
T  5122762 aattttgagaaattagcttgctattcagattctctcctcaccgtcaatctcatcaaggatgatttcaatcattatcatgtttatgttgttctcatctaga 5122861  T
Q  274 atatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggatt 348  Q
    | |||||||||| |||||||||  ||||||||   ||||| | ||| ||||||||||||||||||||||| ||||    
T  5122862 acatcaaagacctcatgagttcaagaaatttcactcttcagcattcactcagagaaggcaatcagtgtgcagatt 5122936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 41701214 - 41701265
Alignment:
Q  27 aaaatagactgtcagttgctagtattgatgctcatatttatccatctcatag 78  Q
    |||||||| |||||||||||||||||||||||||  || |||||||||||||    
T  41701214 aaaatagattgtcagttgctagtattgatgctcaagttcatccatctcatag 41701265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 28493627 - 28493771
Alignment:
Q  199 cagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcg 298  Q
    ||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  ||||||||||||||| |||||||||  ||||||| || |    
T  28493627 cagattctcttcttgttgtcaacctcatcaaagatgatttaaatcattttcatgtctattctgttcttatccaaaacatcaaagacatcatgagtactag 28493726  T
Q  299 aaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
    |||||||| |||||  | ||| |||||||||||||||||||||||    
T  28493727 aaatttctcccttcggcattcactcagagaaggcaatcagtgtgc 28493771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 29806036 - 29806180
Alignment:
Q  199 cagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcg 298  Q
    ||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||  ||||||||||||||| |||||||||  ||||||| || |    
T  29806036 cagattctcttcttgttgtcaacctcatcaaagatgatttaaatcattttcatgtctattctgttcttatccaaaacatcaaagacatcatgagtactag 29806135  T
Q  299 aaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
    |||||||| |||||  | ||| |||||||||||||||||||||||    
T  29806136 aaatttctcccttcggcattcactcagagaaggcaatcagtgtgc 29806180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 16498506 - 16498311
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||||| |||| ||||||| ||| ||| ||||||||||||||||| |||||  |||| |||||||||||  | ||||| |||||||| ||||||||||    
T  16498506 tatcaagggttaaggttggcggttaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcaatgaacctcatcaaagatgatttaaatc 16498407  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagt 339  Q
    | ||||||||  ||  | |||| || |||||||||||||||  ||||  |||||| ||||||  |||||| |  || |||||||| || |||||||    
T  16498406 attttcatgttcatgctattctcattcaaaatatcaaagacatcatggtttctcgtaatttcaaccttcatcactcactcagagagggaaatcagt 16498311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 290
Target Start/End: Complemental strand, 31932288 - 31932142
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||| || ||||| |||| ||||| ||||||| ||| ||||||| ||||||  | |||||||||||  ||||||| || ||||| || ||||| ||||    
T  31932288 tatcaaagtctaaagctggctattagtttcaattttgacgaattggtttgctattcggattcccttctcactgtcaaactcatcaaggaggatttgaatc 31932189  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatg 290  Q
    | |||||||| ||| |||| ||||| |||||||||||||||| ||||    
T  31932188 actttcatgtttatgttgtgcttattcaaaatatcaaagacctcatg 31932142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 35164294 - 35164401
Alignment:
Q  24 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 123  Q
    |||| ||||||||| || |||||| |||||| ||| ||||| |||||  | |||| | ||||||||||| |||||||| ||||| |||||||||||| ||    
T  35164294 tgcagaatagactgccaattgctaatattgacgcttatattcatccaatttatagcacctgtccacacaacatcaacatattcacaagtaaaaaatagat 35164393  T
Q  124 gagaatga 131  Q
    ||||||||    
T  35164394 gagaatga 35164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 349
Target Start/End: Original strand, 6180221 - 6180384
Alignment:
Q  186 ttggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagacc 285  Q
    |||||||||||| | || || |||||| | || ||||| ||||| || | ||| || || | ||||||||||  ||| || || || || ||||||||||    
T  6180221 ttggcttgctactcggactctcttcttacggttaacctcatcaaggatggtttgaaccattgtcatgtctatgctgtgctcattcagaacatcaaagacc 6180320  T
Q  286 acatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 349  Q
     ||| ||| | ||||||||||  ||||||| |||||| |||||||||||||| ||||| |||||    
T  6180321 tcatcagtgcgcgaaatttctctcttcaccattcgctaagagaaggcaatcaatgtgcagattt 6180384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 45516699 - 45516559
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||| |||||| | |||||||| ||||||||||    
T  45516699 tatcaagggttaaggttggcgatcagcttcaattgtgaggaattggcgtgctattcagattcccttcttgcagtcaacttcatcaaagatgatttaaatc 45516600  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagac 284  Q
    | |||||||| |||  |||||| || ||||| |||||||||    
T  45516599 attttcatgtttattatgttctcatacaaaacatcaaagac 45516559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 44093782 - 44093981
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||||| |||| ||||||| | ||||| |||||| |||||||||| |||||  |||| || |||||||| |||||||| |||||||| ||||||||||    
T  44093782 tatcaagggttaaggttggcggtcagcttaaattgttaggaattggcgtgctattcagactcacttcttgcagtcaacctcatcaaagatgatttaaatc 44093881  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
    | |||||||| ||| ||||||| || ||||| |||||||||  ||||  |||||| ||||||  |||||| |  ||  ||||||| || |||||||||||    
T  44093882 attttcatgtttatgttgttctcattcaaaacatcaaagacatcatggtttctcgtaatttcaaccttcatcactcattcagagagggaaatcagtgtgc 44093981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 35296964 - 35297163
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||| ||||| || ||||||||||    
T  35296964 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctgatcaatgatgatttaaatc 35297063  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
    | ||||||||||||  |||||| || |||||||||||||||  ||||  |||||| ||||||  |||||| |  || |||||||| || |||||||||||    
T  35297064 attttcatgtctatgctgttctcattcaaaatatcaaagacatcatggtttctcgtaatttcaaccttcatcactcactcagagagggaaatcagtgtgc 35297163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 14688491 - 14688690
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||| | |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| |||||||||||  ||||||| |||||||| ||||||||||    
T  14688491 tatcaaaggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcaatcaacctcatcaaagatgatttaaatc 14688590  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
    | |||||||| ||| ||||||| || ||||| |||||||||  ||||  |||||| ||||||  |||||| |  || |||||||| || ||||| |||||    
T  14688591 attttcatgtttatgttgttctcattcaaaacatcaaagacatcatggtttctcgtaatttcaaccttcatcactcactcagagagggaaatcaatgtgc 14688690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 44024042 - 44024193
Alignment:
Q  141 cactatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaa 240  Q
    |||||||||||| |||||||||| || || ||||||  ||  ||  || |||||||| | |||||| ||||  |||||||||| || |  || ||  |||    
T  44024042 cactatcaaggtctaaagttggctatgagtttcaatcttggcgaggtgacttgctactcggattccattctcactgtcaacctcattacggaggagctaa 44024141  T
Q  241 atcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgag 292  Q
    |||| |||||||| ||| |||| ||||| |||||||||||||||| ||||||    
T  44024142 atcactttcatgtttatgttgtgcttatacaaaatatcaaagacctcatgag 44024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 13900 - 14099
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||| |||||||| |||||||||     
T  13900 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatt 13999  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
    | |||||||| |||  |||||| || |||||||||||||||  ||||  |||||| ||||||  |||||| |  || |||||||| || |||||||||||    
T  14000 attttcatgtttatgctgttctcattcaaaatatcaaagacatcatggtttctcgtaatttcaaccttcatcactcactcagagagggaaatcagtgtgc 14099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 342
Target Start/End: Original strand, 29259107 - 29259303
Alignment:
Q  146 tcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcag 245  Q
    |||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| ||||||||||| |||||||| |||||||| |||||||||||     
T  29259107 tcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatcat 29259206  T
Q  246 tttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtg 342  Q
    |||||||| |||  |||||| || |||||||||||||||  ||||  |||||| ||||||  |||||| |  || |||||||| || ||| ||||||    
T  29259207 tttcatgtttatgctgttctcattcaaaatatcaaagacatcatggtttctcgtaatttcaaccttcatcactcactcagagagggaaattagtgtg 29259303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 13821265 - 13821386
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||| | |||| ||||||||| | ||| ||||||||||||||| | |||||  |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  13821265 tatcaatggttaaggttggcgatcaacttaaattgtgaggaattgacgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatc 13821364  T
Q  244 agtttcatgtctatattgttct 265  Q
    | |||||||| ||| |||||||    
T  13821365 attttcatgtttatgttgttct 13821386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 174 - 348
Target Start/End: Complemental strand, 13075401 - 13075227
Alignment:
Q  174 aattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaa 273  Q
    |||| ||||||||| ||||||||  || |||| || ||  | ||||| ||||| || || ||||||||||| |||||||| ||| ||||||| ||| |      
T  13075401 aattttgaggaattagcttgctattcaaattctctcctcaccgtcaatcttataaaggatgatttaaatcattttcatgtttatgttgttctcatctagg 13075302  T
Q  274 atatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggatt 348  Q
    | |||||||||| || ||||||| ||||||||    |||| | ||||||||||||||||||||||||||| ||||    
T  13075301 acatcaaagacctcacgagttctagaaatttcactgttcaacattcgctcagagaaggcaatcagtgtgcagatt 13075227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 349
Target Start/End: Complemental strand, 26706879 - 26706713
Alignment:
Q  183 gaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaag 282  Q
    |||||||| |||||| ||||||| |||||| ||||||| || ||||   | || |||||||| | |||||||||| |||| || || || || ||||| |    
T  26706879 gaattggcatgctactcagattctcttcttactgtcaatctcatcatgcatgaattaaatcattatcatgtctatgttgtgctaattcagaacatcaagg 26706780  T
Q  283 accacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 349  Q
    ||| ||| | |||| |||||| ||  ||||| | ||| ||||||||||| ||||||||||| |||||    
T  26706779 acctcatcacttctagaaattactctcttcatcattcactcagagaaggtaatcagtgtgcagattt 26706713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 40736817 - 40736660
Alignment:
Q  186 ttggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatcagtttcatgtctatattgttcttatccaaaatatcaaagacc 285  Q
    ||||||||||||  |||||| |||||| | || || || ||||| || | ||| ||||| | ||||||||||  ||| || ||  | || ||||||||||    
T  40736817 ttggcttgctacttagattctcttcttacggttaatctcatcaaggatggtttgaatcattatcatgtctatgctgtgctcatttagaacatcaaagacc 40736718  T
Q  286 acatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 343  Q
     |||  || | ||||||||||  ||||||| |||||| ||||||||||||||||||||    
T  40736717 tcatcggtgcgcgaaatttctctcttcaccattcgctaagagaaggcaatcagtgtgc 40736660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 28574288 - 28574360
Alignment:
Q  7 caatgaga-tggacatcatgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatag 78  Q
    |||||||| |||||||  ||||||||||| || || |||||||||||||  |||||||| |||||||||||||    
T  28574288 caatgagactggacatattgcaaaatagattgccaattgctagtattgacactcatattcatccatctcatag 28574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 49147986 - 49147825
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgctgtcaaccttatcaaagaagatttaaatc 243  Q
    |||||||| |||| ||||||||| ||||| |||||||||| |||||| |||||  |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  49147986 tatcaagggttaaggttggcgatcagcttaaattgtgaggtattggcgtgctattcagactcccttcttgcagtcaacctcatcaaagatgatttaaatc 49147887  T
Q  244 agtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttc 305  Q
    | || ||||| ||| ||||||| || ||||| || ||||||  ||||  |||||| ||||||    
T  49147886 atttccatgtttatgttgttctcattcaaaacattaaagacatcatggtttctcgtaatttc 49147825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 43367634 - 43367737
Alignment:
Q  241 atcagtttcatgtctatattgttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtg 340  Q
    |||| |||||||||||| | |||  |||| |||| |||||||||  ||||||| || ||||||||| |||||| | |||||||||||||||||||||| |    
T  43367634 atcattttcatgtctatgtcgtt--tatctaaaacatcaaagacatcatgagtactagaaatttctcccttcagcattcgctcagagaaggcaatcagcg 43367731  T
Q  341 tgcgga 346  Q
    ||||||    
T  43367732 tgcgga 43367737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 3423246 - 3423360
Alignment:
Q  24 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 123  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| |||||||||||| | ||| ||| |||||| |  |    
T  3423246 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcaacataatcacaagaaaaaaagaggt 3423345  T
Q  124 gagaatgactttcat 138  Q
    |||||||| ||||||    
T  3423346 gagaatgagtttcat 3423360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 22164031 - 22163917
Alignment:
Q  24 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 123  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |    
T  22164031 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggt 22163932  T
Q  124 gagaatgactttcat 138  Q
    |||||||| ||||||    
T  22163931 gagaatgagtttcat 22163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 47158894 - 47158821
Alignment:
Q  276 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 349  Q
    |||||||||| ||| ||| |  |||||||||  ||||||| |||||| |||||||||||||| ||||| |||||    
T  47158894 atcaaagacctcatcagtgcgtgaaatttctctcttcaccattcgctaagagaaggcaatcaatgtgcagattt 47158821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 16768179 - 16768109
Alignment:
Q  144 tatcaaggtttaaagttggcgattagcttcaattgtgaggaattggcttgctacacagattcccttcttgc 214  Q
    |||||||| |||| ||||||| | | ||| ||||||||||||||||| |||||  |||| |||||||||||    
T  16768179 tatcaagggttaaggttggcggtcaacttaaattgtgaggaattggcgtgctattcagactcccttcttgc 16768109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 33631415 - 33631529
Alignment:
Q  24 tgcaaaatagactgtcagttgctagtattgatgctcatatttatccatctcatagaatctgtccacacagcatcaacaaattcagaagtaaaaaataaat 123  Q
    ||||||||||| || || |||||||||||||   ||||||| ||||||||||||  | || |||| ||||||||| || | ||| ||| |||||| |  |    
T  33631415 tgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggt 33631514  T
Q  124 gagaatgactttcat 138  Q
    |||||||| ||||||    
T  33631515 gagaatgagtttcat 33631529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University