View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_89 (Length: 374)
Name: NF10954A_low_89
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2 - 357
Target Start/End: Original strand, 32472716 - 32473071
Alignment:
| Q |
2 |
agaataaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatctacgaaaacgagtttggattcgc |
101 |
Q |
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| T |
32472716 |
agaataaggagaggtttatgttgttttgaagggaataaggataaagcttggagaacaagatcacgtgcggcgatatccacgaaaacgagtttggattcgc |
32472815 |
T |
|
| Q |
102 |
agtggaggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaagggaacggcgaagtggagttcatacat |
201 |
Q |
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| T |
32472816 |
agtggaggaggatgttggagatgatacgcgcgtcaaggcgcgtgttgatgttgttaaggatagctccggtgaaggggacggcgaagtggagttcatacat |
32472915 |
T |
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| Q |
202 |
ggcggggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32472916 |
ggcggggatgttgggagcgatgacggagacgacgttgccgcggcggatacctaaggaggtgatggcggaggcaagttggaggcatcgtttgtgggtttga |
32473015 |
T |
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| Q |
302 |
gaccatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
357 |
Q |
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| T |
32473016 |
gaccatgtgaaaacggtgtcgttgtagatgatggaaggtgtgttggggtagattgt |
32473071 |
T |
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