View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_91 (Length: 372)
Name: NF10954A_low_91
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 40988425 - 40988069
Alignment:
| Q |
1 |
tcaatcaaatttcagacacacaatctgaacttgaaaattatgaagcagtgaatctacaaatggaatgtcttttagtatacaaaagaatggggcattttat |
100 |
Q |
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| T |
40988425 |
tcaatcaaatttcagacacacaatctgaacttgaaaattatgaagcagtgaatctacaaatggaatgtcttttagtatacaaaagaatggggcattttat |
40988326 |
T |
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| Q |
101 |
acaaaattgttctttcatcagccaatgtcaatnnnnnnncctgatactagattagccaaaagatgatggaagacttggcatcaaaaggtttctttcattg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40988325 |
acaaaattgttctttcatcagccaatgtcaataaaaaaacctgatactagattagccaaaagatgatggaagacttggcatcaaaaggtttctttcattg |
40988226 |
T |
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| Q |
201 |
tacctatatgcttcatgtgcacttttttcccacgaagaaaagtgagggatgagtcatgcatggggtggcttgctcttgaagttctcatatttcgatcttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40988225 |
tacctatatgcttcatgtgcacttttttcccacgaagaaaagtgagggacgagtcatgcatggggtggcttgctcttgaagttctcatatttcgatcttg |
40988126 |
T |
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| Q |
301 |
aatcatactcaattgcaaggagccgattagcacctaaattgatcaatggttggtgat |
357 |
Q |
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| T |
40988125 |
aatcatactcaattgcaaggagccgattagcacctaaattgatcaatggttggtgat |
40988069 |
T |
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