View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_92 (Length: 371)
Name: NF10954A_low_92
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 67 - 362
Target Start/End: Original strand, 24414033 - 24414321
Alignment:
| Q |
67 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttgaacttcaatattacacgtgctttagttgctgttgtagaa |
166 |
Q |
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| T |
24414033 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttcaacttcaatattagacgtgctttaattgctgttgtagaa |
24414132 |
T |
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| Q |
167 |
tcaacttccttgcaactaataattnnnnnnntaaggaatcggaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttct |
266 |
Q |
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|||||| ||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24414133 |
tcaactcccttgcaacaaaaaa-------aataaggaatacaaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaattggttct |
24414225 |
T |
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| Q |
267 |
tgcctattcaccaataacttcaataggatttaagaaatacgctccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414226 |
tgcctattcaccaataacttcaataggatttaagaaatatgttccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
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Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 19024178 - 19024446
Alignment:
| Q |
8 |
aaacagagaatctaaagtgaaattcttaggagagatgattttgttaccacttcaagctctctcccaccaccgtgagtcagtcgccaacgttccaaagccc |
107 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
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| T |
19024178 |
aaacagagaatctaaagtgaaattcttaggggaggtgattgtgttaccacttcaagttctctcccaccaccgtgagtcagatatcaacgttccgaagccc |
19024277 |
T |
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| Q |
108 |
tttacctcaaccgttgcttgaacttcaatattacacgtgctttagttgctgttgtagaatcaacttccttgcaactaataattnnnnnnntaaggaatcg |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| || || |||||||| |
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| T |
19024278 |
tttacctcaaccgttg-ttgaacttcaatattacacatgctttagttgttgttgtagaatcaactcccttgcaacaaaaaa-------aataaggaatac |
19024369 |
T |
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| Q |
208 |
gaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
19024370 |
aaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
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