View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_93 (Length: 371)
Name: NF10954A_low_93
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 3569277 - 3568926
Alignment:
| Q |
9 |
aacagagattcagatgcaaacatgaccatgattg-atcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgctttcggagactt |
107 |
Q |
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| T |
3569277 |
aacaaagattcagatgcaaacatgaccatgattggatcgcaatttaaaaccttgaccaaaacattgcattctagtcaatgatgtgtgcttttggagactt |
3569178 |
T |
|
| Q |
108 |
gaacattaccttggctccttgcgctgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctg |
207 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569177 |
gaacattaccctggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctg |
3569078 |
T |
|
| Q |
208 |
aaacacttgtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccactggcatccaagttacccttctcgttcttgtgtg |
307 |
Q |
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| T |
3569077 |
aaacgcttgtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaaaacaaccattggcatccaagttcccc------ttcttgtgtg |
3568984 |
T |
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| Q |
308 |
gataaaagaagtaataatagggtatacatccaataggacctgcgttgtgaatccaaaa |
365 |
Q |
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| T |
3568983 |
gataatagatgttatcatagggtaagcatccaataggacctgtattgtgaatcgaaaa |
3568926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 106 - 365
Target Start/End: Complemental strand, 3602184 - 3601924
Alignment:
| Q |
106 |
ttgaacattaccttggctccttgcgctgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagc |
205 |
Q |
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| T |
3602184 |
ttgaacattaccttggttccttgcattgctgataagtgtatatttgaccgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagc |
3602085 |
T |
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| Q |
206 |
tgaaacacttg-tcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccactggcatccaagttacccttctcgttcttgt |
304 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3602084 |
tgaaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgt |
3601985 |
T |
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| Q |
305 |
gtggataaaagaagtaataatagggtatacatccaataggacctgcgttgtgaatccaaaa |
365 |
Q |
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| T |
3601984 |
gtggataaaagaagtaataatagggtatacattcaataggacctgtgttgtgaatccaaaa |
3601924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 112 - 365
Target Start/End: Complemental strand, 14341058 - 14340804
Alignment:
| Q |
112 |
attaccttggctccttgcgctgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaac |
211 |
Q |
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| T |
14341058 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaac |
14340959 |
T |
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| Q |
212 |
acttg-tcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccactggcatccaagttacccttctcgttcttgtgtggat |
310 |
Q |
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| T |
14340958 |
acttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtggat |
14340859 |
T |
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| Q |
311 |
aaaagaagtaataatagggtatacatccaataggacctgcgttgtgaatccaaaa |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14340858 |
aaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaa |
14340804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 3591337 - 3591052
Alignment:
| Q |
14 |
agattcagatgcaaacatgaccatgattg-atcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgctttcggagacttgaaca |
112 |
Q |
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||||| ||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||| ||||||||||||||||| | |||| ||||||||||||| |
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| T |
3591337 |
agattgagatgcaaacatgaccatgattggatcacaatttaaaaccttgacaaatacattgcattctagtcaatgatgtattcttttggagacttgaaca |
3591238 |
T |
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| Q |
113 |
ttaccttggc--tccttgcgctgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaa |
210 |
Q |
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| T |
3591237 |
ttaccttggtattccttgcgttgctgataagtttatattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaa |
3591138 |
T |
|
| Q |
211 |
cactt-gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccactggcatccaagttacccttct |
295 |
Q |
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||||| ||||||||||| || ||| ||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
3591137 |
cacttggtcttttagctaccagttatattcttgagcaagcttattgtgaggtttaacacagccattggcatctaagttacccttct |
3591052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 40 - 365
Target Start/End: Complemental strand, 1409653 - 1409333
Alignment:
| Q |
40 |
ttgatcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgctttcggagacttgaacattaccttggctccttgcgctgctgata |
139 |
Q |
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||||||||||| ||||| ||| |||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||| ||| |
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| T |
1409653 |
ttgatcgcaatacaaaaccttggccaagacattatattctagtcaatgatgtgtgctttttgagtcttgaacattaccttggctctttgcattgctaata |
1409554 |
T |
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| Q |
140 |
agtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacac-ttgtcttttagctgcctgttctatt |
238 |
Q |
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||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
1409553 |
agtttatatttggctgtgtacacatcaacatatgtaaacttggctaatggaaactttcgccttagctgaaacactttgtcttttagctgcctgttatatt |
1409454 |
T |
|
| Q |
239 |
cctgagcaagctcgttgtgaggtttaacacagccactggcatccaagttacccttctcgttcttgtgtggataaaagaagtaataatagggtatacatcc |
338 |
Q |
| |
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| T |
1409453 |
cttgagcaagctcattgtgaggtataacacagccatagacatccaagttaccc------ttcttgtgtggataatagatgttattatagggcaagcatcc |
1409360 |
T |
|
| Q |
339 |
aataggacctgcgttgtgaatccaaaa |
365 |
Q |
| |
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||| |||||| | |||||||||||||| |
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| T |
1409359 |
aattggacctacattgtgaatccaaaa |
1409333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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