View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_99 (Length: 365)
Name: NF10954A_low_99
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_99 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 176 - 365
Target Start/End: Original strand, 28136756 - 28136937
Alignment:
| Q |
176 |
aaagtaagattgaatagagaatatgactcaccaagaattggagatgatgaagcttgcggtgtgggggcgcgacggcgtgacagtagagttacggtnnnnn |
275 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28136756 |
aaagtaagattgaatagagaagatgactcaccaagaattggagatgatgaagcttgcggtgtgggggtgcgacggcgtgacagtagagttacggt----- |
28136850 |
T |
|
| Q |
276 |
nnnnnnnnnnnnagcgtgaggcaacacagagtggacgggggaggatgagtgcggtggggccgcggggggttggtgggggcagatctaagg |
365 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||| ||||||||||||| |
|
|
| T |
28136851 |
---agagagagaagcgtgaggcaacacagagtggacggtggaggatgagtgcggtggtgccgcggtggtttggtggtggcagatctaagg |
28136937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 28136613 - 28136752
Alignment:
| Q |
2 |
catgccaccggctgagctgaccaacgtcgtagccatgaatnnnnnnnnnnnnnnnctcgaagaaaaagctgattgagtagggttagggtttcgtatacac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28136613 |
catgccaccggctgagctgaccaacgtcgtagccatgaatgagagagagag----ctcgaagaaaaagctgattgagtagggttagggtttcgtatacac |
28136708 |
T |
|
| Q |
102 |
-aaaaattaatattaccaaaaagtagtaatgtatgaacatgatt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28136709 |
aaaaaattaatattaccaaaaagtagtaatgtatgaacatgatt |
28136752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 44805921 - 44805888
Alignment:
| Q |
6 |
ccaccggctgagctgaccaacgtcgtagccatga |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44805921 |
ccaccggctgagctgaccaacgtcgtagccatga |
44805888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 2230378 - 2230342
Alignment:
| Q |
2 |
catgccaccggctgagctgaccaacgtcgtagccatg |
38 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
2230378 |
catgccaccggctgagctgtcgaacgtcgtagccatg |
2230342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University