View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_high_1 (Length: 710)
Name: NF10955_high_1
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 22 - 696
Target Start/End: Complemental strand, 1329607 - 1328933
Alignment:
| Q |
22 |
cgggttcgggttccttggcttcttcatccgaattgttctcttcttgaacatcagctttattgctttgtgctagcatgttcttatctttgataaactcttc |
121 |
Q |
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| T |
1329607 |
cgggttcgggttccttggcttcttcatccgaattgttctcttcttgaacatcagctttattgctttgtgctagcatgttcttatctttgataaactcttc |
1329508 |
T |
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| Q |
122 |
cataacctctaacttctttggtgtgaccttatctatctcagggtactcagaagagcgacaaattccaatattcttggaccatccatagaagaggtctagc |
221 |
Q |
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| T |
1329507 |
cataacctctaacttctttggtgtgaccttatctatctcagggtactcagaagagcgacaaattccaatattcttggaccatccatagaagaggtctagc |
1329408 |
T |
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| Q |
222 |
tcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctgcgacatccatgtcaggaaaacggtcgattaagatgctcaatattt |
321 |
Q |
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| T |
1329407 |
tcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctgcgacatccatgtcagaaaaacggtcgattaagatgctcaatattt |
1329308 |
T |
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| Q |
322 |
ctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccactatcacaattctatggttctttgctgtccctgttgcattgaaaca |
421 |
Q |
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| T |
1329307 |
ctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccactatcacaattctatggctctttgctgttcctgttgcattgaaaca |
1329208 |
T |
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| Q |
422 |
gatagccatgagaatgctttgtatacatgtgtaatgtaatgtgaatatatcatatggtatgcatacttagatatatttgattgcaaaaaggtgtttgata |
521 |
Q |
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| T |
1329207 |
gatagccatgagaatgctttgtatacatgtgtaatgtaatgtgaatatatcatatggtatgcatacttagatatatttgattgcaaaaaggtgtttgata |
1329108 |
T |
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| Q |
522 |
agaaaaaactagataaaatctaataatatataaagcaaattgaatggaaggataagtattttgttatgcaaaatgtatggtctaatgatcacaaacctgt |
621 |
Q |
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| T |
1329107 |
agaaaaaactagataaaatctaataatatataaagcaaattgaatggaaggataagtattttgttatgcaaaatgtatggtctaatgatcacaaacctgt |
1329008 |
T |
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| Q |
622 |
ggggcgacaagctaaaaagcgttcaagaagcaattgcaaatgctgcattttggaaaaaatttgctctaacttcat |
696 |
Q |
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| T |
1329007 |
ggggcgacaagctaaaaagcgttcaagaagcaattgcaaatgctgcattttggaaaaaatttgctctaacttcat |
1328933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 335 - 410
Target Start/End: Complemental strand, 1924897 - 1924822
Alignment:
| Q |
335 |
atatgattgaaaactctccttcacaattggataaagagccactatcacaattctatggttctttgctgtccctgtt |
410 |
Q |
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| T |
1924897 |
atatgtttgaaaactctccttcacaattgggtagagtgccactatcaccattctatgtgtctttgctctacctgtt |
1924822 |
T |
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