View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10955_high_11 (Length: 392)

Name: NF10955_high_11
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10955_high_11
NF10955_high_11
[»] chr8 (9 HSPs)
chr8 (7-375)||(10683158-10683526)
chr8 (59-167)||(44912966-44913074)
chr8 (29-167)||(43811260-43811398)
chr8 (29-167)||(201461-201599)
chr8 (29-167)||(316298-316436)
chr8 (29-167)||(30409580-30409718)
chr8 (29-116)||(28647153-28647240)
chr8 (29-167)||(1287569-1287707)
chr8 (29-116)||(41946058-41946145)
[»] chr5 (9 HSPs)
chr5 (43-248)||(16598070-16598275)
chr5 (29-167)||(12019531-12019669)
chr5 (29-167)||(37659469-37659607)
chr5 (29-116)||(10275279-10275366)
chr5 (29-167)||(7103151-7103289)
chr5 (29-167)||(16794911-16795049)
chr5 (31-248)||(30048062-30048276)
chr5 (64-167)||(40371024-40371127)
chr5 (29-167)||(30696038-30696176)
[»] chr3 (6 HSPs)
chr3 (29-167)||(43548457-43548595)
chr3 (49-167)||(22931084-22931202)
chr3 (29-167)||(54171121-54171259)
chr3 (29-116)||(21847870-21847957)
chr3 (29-167)||(756564-756702)
chr3 (29-167)||(9698323-9698461)
[»] scaffold0027 (1 HSPs)
scaffold0027 (35-268)||(54093-54325)
[»] scaffold0044 (1 HSPs)
scaffold0044 (29-167)||(48642-48780)
[»] chr7 (3 HSPs)
chr7 (29-167)||(7943860-7943998)
chr7 (32-272)||(730353-730593)
chr7 (29-167)||(27757639-27757777)
[»] chr6 (4 HSPs)
chr6 (29-167)||(8319281-8319419)
chr6 (29-121)||(17160335-17160427)
chr6 (29-167)||(17881256-17881394)
chr6 (29-113)||(27571563-27571647)
[»] chr4 (5 HSPs)
chr4 (29-167)||(44147800-44147938)
chr4 (31-294)||(20290246-20290509)
chr4 (29-114)||(31355421-31355506)
chr4 (29-116)||(43683007-43683094)
chr4 (29-167)||(27186881-27187019)
[»] chr2 (4 HSPs)
chr2 (29-167)||(8051634-8051772)
chr2 (29-167)||(36671293-36671431)
chr2 (29-114)||(13270358-13270443)
chr2 (47-116)||(35953920-35953989)
[»] chr1 (3 HSPs)
chr1 (29-167)||(39794637-39794775)
chr1 (29-167)||(26312255-26312393)
chr1 (231-294)||(36617812-36617875)
[»] scaffold0009 (1 HSPs)
scaffold0009 (29-142)||(64579-64692)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 10683526 - 10683158
Alignment:
Q  7 gaagcataggatatactagaagagtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatgg 106  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10683526 gaagcatgggatatactagaagagtatcgtgaaggtgatgaaaaggtgaagcagatcaagcttcagtctctaagaaggaaatttaaactgatgcagatgg 10683427  T
Q  107 aagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgttta 206  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10683426 aagatgataaaaaaattgttgattacatatccaaactgattaatattttcaatcagatgaagacatgcagttaaacaatttcagattaacatattgttta 10683327  T
Q  207 gaagatcatgtgaactctatccccaagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagattgaaaagctgcaaagc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10683326 gaagatcatgtgaactctatccccaagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaatattgaaaagctgcaaagc 10683227  T
Q  307 tctcagaaaagtgaaacatgtagatcttagaaccctggttgcagaaggcatgggaaaaattgcaattga 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10683226 tctcagaaaagtgaaacatgtagatcttagaaccctggttgcagaaggcatgggaaaaattgcaattga 10683158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 44913074 - 44912966
Alignment:
Q  59 agatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaa 158  Q
    |||| |||||||||||| ||||||| || |||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||| || | ||    
T  44913074 agataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaa 44912975  T
Q  159 tcagatgaa 167  Q
    |||||||||    
T  44912974 tcagatgaa 44912966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 43811398 - 43811260
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || |||  |||    
T  43811398 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga 43811299  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| |||||| || | |||||||||||    
T  43811298 atacatctctaaactcattaatcttgtgaatcagatgaa 43811260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 201599 - 201461
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  201599 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 201500  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  201499 gtacatctctaaactcatcaatcttgtgaatcagatgaa 201461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 316436 - 316298
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  316436 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 316337  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  316336 gtacatctctaaactcatcaatcttgtgaatcagatgaa 316298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 30409718 - 30409580
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  30409718 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 30409619  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  30409618 gtacatctctaaactcatcaatcttgtgaatcagatgaa 30409580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 28647153 - 28647240
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 116  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| |  |||||||||||||||||||||||||| ||||||||||||||    
T  28647153 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaataactaagaaggaaatttgaactgatgcaaatggaagatgatca 28647240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 1287569 - 1287707
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| ||||| ||   ||| |||||||| || || |||| ||||||||| |||||| |||||||||||||||| || |||  |||    
T  1287569 agtatcatgaaggtgatgataaggtgaaatcgattaagcttcaatcactgagaaagaaatttgagctgatgtagatggaagatgatcagaagatttctga 1287668  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  1287669 atacatctctaaactcatcaatcttgtgaatcagatgaa 1287707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 41946058 - 41946145
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 116  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || ||| | ||||||||||| |||||| ||||||||||||||||    
T  41946058 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactacggaggaaatttgagctgatgtagatggaagatgatca 41946145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 248
Target Start/End: Complemental strand, 16598275 - 16598070
Alignment:
Q  43 gatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaac 142  Q
    ||||||||||| ||| |||| |||||||| ||| || ||||||||||||||  | |||| ||||||||||| || || |||||||||||||| || ||      
T  16598275 gatgaaaaggtgaagtagataaagcttcactctttatgaaggaaatttgaatagttgcaaatggaagatgagcagaagattgttgattacatctctaaga 16598176  T
Q  143 tgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatccccaagatttgattt 242  Q
    |||||||| ||   |||| ||||||  |||| ||| |||| |||||||||  ||| |||||| ||||||||||| |||||||||| | ||| ||||||||    
T  16598175 tgattaatgttgaaaatcggatgaaggcatggagtgaaactatttcagatccacaaattgttgagaagatcatgagaactctatctctaaggtttgattt 16598076  T
Q  243 catagt 248  Q
    ||||||    
T  16598075 catagt 16598070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 12019531 - 12019669
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || |||  |||    
T  12019531 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga 12019630  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| |||||| || | |||||||||||    
T  12019631 atacatctctaaactcattaatcttgtgaatcagatgaa 12019669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 37659469 - 37659607
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || |||  |||    
T  37659469 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga 37659568  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| |||||| || | |||||||||||    
T  37659569 atacatctctaaactcattaatcttgtgaatcagatgaa 37659607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 10275279 - 10275366
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 116  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  10275279 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatca 10275366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 7103289 - 7103151
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  7103289 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 7103190  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  7103189 gtacatctctaaactcatcaatcttgtgaatcagatgaa 7103151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 16794911 - 16795049
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  16794911 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 16795010  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  16795011 gtacatctctaaactcatcaatcttgtgaatcagatgaa 16795049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 30048062 - 30048276
Alignment:
Q  31 tatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatt 130  Q
    ||||||||| | ||||| ||||| ||| |||| ||||||| |||| |||||||||||||| |  ||||||| |||||||| || ||||| ||| ||||||    
T  30048062 tatcatgaaggagatgagaaggtgaaggagataaagcttcggtctttaagaaggaaatttaagttgatgcaaatggaagaggagcaaaagattcttgatt 30048161  T
Q  131 acatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccc 230  Q
    |||| |  ||  |||||||| || |    || |||||  |||||||| ||||||| || |||||||| ||| || ||| ||||||  |||| ||||| ||    
T  30048162 acatctttaagttgattaatgttgt---acaaatgaaggcatgcagtgaaacaatctctgattaacaaattattgagacgatcataagaacactatctcc 30048258  T
Q  231 aagatttgatttcatagt 248  Q
    ||||||| |||| |||||    
T  30048259 aagattttattttatagt 30048276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 40371127 - 40371024
Alignment:
Q  64 aagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaatcaga 163  Q
    ||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||  ||| ||||| || ||||| || ||| || | |||||||    
T  40371127 aagcttcagtcactgagaaggaaatttgaactgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcaga 40371028  T
Q  164 tgaa 167  Q
    ||||    
T  40371027 tgaa 40371024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 30696038 - 30696176
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    |||| |||||| ||||||| || || |||  ||| |||||||| || || |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  30696038 agtaccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 30696137  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  30696138 gtacatctctaaactcatcaatcttgtgaatcagatgaa 30696176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 43548457 - 43548595
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||  |||    
T  43548457 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatcaaaagatttctga 43548556  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     |||||||| ||||| || ||| || | |||||||||||    
T  43548557 atacatatctaaactcatcaatcttgtgaatcagatgaa 43548595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 22931202 - 22931084
Alignment:
Q  49 aaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgatta 148  Q
    ||||| |||||||| ||||||||||   ||||||||||||||||  ||||||| |||||||||||  |||| |||||||||||||| ||||  |||||||    
T  22931202 aaggtgaagcagataaagcttcagttattaagaaggaaatttgagttgatgcaaatggaagatgagaaaaagattgttgattacatctccatgctgatta 22931103  T
Q  149 atattttcaatcagatgaa 167  Q
    || || | |||||||||||    
T  22931102 atgttgtaaatcagatgaa 22931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 54171259 - 54171121
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |||  |||    
T  54171259 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcaaaagatttctga 54171160  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  54171159 gtacatctctaaactcatcaatcttgtgaatcagatgaa 54171121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 21847870 - 21847957
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 116  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  21847870 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatca 21847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 756564 - 756702
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| || || || || |||||||| |||||||||||||||| |||||| || |||  |||    
T  756564 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgaggagtaaatttgagctgatgcagatggaagttgatcacaagatttctga 756663  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| |||||||| || ||| || | |||||||||||    
T  756664 atacatctccaaactcatcaatcttgtgaatcagatgaa 756702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 9698323 - 9698461
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||| ||| || || |||  ||| |||||||| || || |||||||||||||| ||| |||| |||||||||||||| || |||  |||    
T  9698323 agtatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctggtgcaaatggaagatgatcagaagatttctga 9698422  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  9698423 atacatctctaaactcatcaatcttgtgaatcagatgaa 9698461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 35 - 268
Target Start/End: Complemental strand, 54325 - 54093
Alignment:
Q  35 atgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacat 134  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| | || ||||||||| |||||||  | ||||||||  |||| || ||||||||||||||    
T  54325 atgaaggtgatgaaaaggtgaagcagatcaagcttcaatctttgaggaggaaatttcaactgatataaatggaagaatatcataagattgttgattacat 54226  T
Q  135 atccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatccccaaga 234  Q
     | |||| |||| || ||| | ||||||| |||  |||| |||   |||||||  ||| |||| |||||| | ||||| ||| |||| ||||| ||||||    
T  54225 ct-caaagtgatcaacattgtgaatcagaggaaggcatggagtgggacaatttatgatcaacaaattgttgaaaagataatgagaaccctatcaccaaga 54127  T
Q  235 tttgatttcatagttatggctatttaagaatcaa 268  Q
    ||| | ||||||||| | || ||| |||||||||    
T  54126 tttaacttcatagttgtagcaattcaagaatcaa 54093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 48780 - 48642
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  48780 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 48681  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  48680 gtacatctctaaactcatcaatcttgtgaatcagatgaa 48642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 7943998 - 7943860
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  7943998 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 7943899  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  7943898 gtacatctctaaactcatcaatcttgtgaatcagatgaa 7943860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 730353 - 730593
Alignment:
Q  32 atcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatta 131  Q
    |||||||| | ||||| ||||| |||  ||| |||||||||||| | |||||||| |||||| ||||||||||||| || || ||||| |||| ||| ||    
T  730353 atcatgaaggcgatgataaggtgaagttgattaagcttcagtctttgagaaggaagtttgaattgatgcagatggaggaagagcaaaatattgctgaata 730452  T
Q  132 catatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccca 231  Q
     || |||||||| || |||||| | |||||||||||  | ||  |  || ||||  | ||| |||| |||||| |||| || ||| |||| |||||  ||    
T  730453 tatctccaaactcatcaatattgtgaatcagatgaaggcttgtggagaagcaatgactgatcaacaaattgttgagaaaatgatgagaacactatcatca 730552  T
Q  232 agatttgatttcatagttatggctatttaagaatcaaagga 272  Q
    ||||||||||| |||||  | || ||| |||||||||||||    
T  730553 agatttgattttatagtggttgcaattcaagaatcaaagga 730593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 27757639 - 27757777
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| || ||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  27757639 agtatcatgaaggtgatgataaagtgaagttgattaaacttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 27757738  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  27757739 gtacatctctaaactcatcaatcttgtgaatcagatgaa 27757777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 8319419 - 8319281
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  8319419 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 8319320  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  8319319 gtacatctctaaactcatcaatcttgtgaatcagatgaa 8319281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 17160335 - 17160427
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaa 121  Q
    |||| |||||| ||||||| || || |||  ||| |||||||| || || || ||||||||||| ||||||||||||||||||||| ||||||    
T  17160335 agtaccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgataaaaaaa 17160427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 17881394 - 17881256
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || || |||||||||||||| ||  |||| |||||||||||||| || |||  |||    
T  17881394 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctattgcaaatggaagatgatcataagatttatga 17881295  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  17881294 atacatctctaaactcatcaatcttgtgaatcagatgaa 17881256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 27571647 - 27571563
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatga 113  Q
    ||||||||||| ||||||| || || ||   ||| |||||||| || || |||||||| |||||||||||||| |||||||||||    
T  27571647 agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgagaaggaagtttgaactgatgcaaatggaagatga 27571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 44147800 - 44147938
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  44147800 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 44147899  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  44147900 gtacatctctaaactcatcaatcttgtgaatcagatgaa 44147938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 294
Target Start/End: Original strand, 20290246 - 20290509
Alignment:
Q  31 tatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatt 130  Q
    ||||||||| ||||||| |||||  ||||||| |||||||||||  | |||||||| ||| || ||||||| ||||| |||||  | || |||| |||||    
T  20290246 tatcatgaaggtgatgataaggtggagcagataaagcttcagtcattgagaaggaagtttaaattgatgcaaatggaggatgagaagaagattgctgatt 20290345  T
Q  131 acatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccc 230  Q
    |||| |||||||| || ||| || | |||||||| ||  | |   |  ||  | || ||||| |||| |||||| |||| |||||| |||| ||||| ||    
T  20290346 acatctccaaactaatcaatgttgtaaatcagataaaagcttatggagaagtagttacagatcaacaaattgttgagaaaatcatgagaacactatctcc 20290445  T
Q  231 aagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagattgaa 294  Q
    |||||||||||| |||||  | || ||| | |||||||||||  |||||||  |||||||||||    
T  20290446 aagatttgattttatagtggttgcaattcatgaatcaaaggatgtgaaaactttgaagattgaa 20290509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 31355421 - 31355506
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgat 114  Q
    ||||||||||| ||||||| || || |||  ||| || |||||||| || |||||||||||||| |||||||||||||||||||||    
T  31355421 agtatcatgaaggtgatgataaagtgaagatgattaaacttcagtcactgagaaggaaatttgagctgatgcagatggaagatgat 31355506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 43683094 - 43683007
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 116  Q
    ||||||||||| ||||||| || || |||  ||| || ||||| || || |||||||||||||||||||| || ||||||||||||||    
T  43683094 agtatcatgaaggtgatgataaagtgaagttgattaaacttcaatcactgagaaggaaatttgaactgatacaaatggaagatgatca 43683007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 27186881 - 27187019
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||| ||| || || |||  ||| |||||||| || || |||||||||||||| ||| |||| |||||||||||||| || |||  |||    
T  27186881 agtatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctggtgcaaatggaagatgatcagaagatttctga 27186980  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  27186981 atacatctctaaactcatcaatcttgtgaatcagatgaa 27187019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 8051634 - 8051772
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  8051634 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 8051733  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  8051734 gtacatctctaaactcatcaatcttgtgaatcagatgaa 8051772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 36671293 - 36671431
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  36671293 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 36671392  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  36671393 gtacatctctaaactcatcaatcttgtgaatcagatgaa 36671431  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 13270443 - 13270358
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgat 114  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| || || |||||||||||||| |||||||| ||||||||||||    
T  13270443 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgat 13270358  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 35953989 - 35953920
Alignment:
Q  47 aaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca 116  Q
    |||| ||||||  ||| |||||||| || || |||||||||||||| |||||||| ||||||||||||||    
T  35953989 aaaaagtaaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgatca 35953920  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 39794637 - 39794775
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  39794637 agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 39794736  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  39794737 gtacatctctaaactcatcaatcttgtgaatcagatgaa 39794775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 26312255 - 26312393
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| || || |||  ||| ||||| || ||||| |||||||||||||| |||||||| |||||||||||||| || |||  |||    
T  26312255 agtatcatgaaggtgatgataaagtgaagttgattaagctccaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga 26312354  T
Q  129 ttacatatccaaactgattaatattttcaatcagatgaa 167  Q
     ||||| || ||||| || ||| || | |||||||||||    
T  26312355 gtacatctctaaactcatcaatcttgtgaatcagatgaa 26312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 36617812 - 36617875
Alignment:
Q  231 aagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagattgaa 294  Q
    ||||||||||||||||||| | |  ||| |||||||||||||  ||||||| ||||||||||||    
T  36617812 aagatttgatttcatagttgttgtcattcaagaatcaaaggatgtgaaaactatgaagattgaa 36617875  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 64692 - 64579
Alignment:
Q  29 agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga 128  Q
    ||||||||||| ||||||| ||||| ||   ||| |||||||| || || || ||||||||||| ||||||||||||||||||||||| || |||  |||    
T  64692 agtatcatgaaggtgatgataaggtgaaattgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgatcagaagatttctga 64593  T
Q  129 ttacatatccaaac 142  Q
     ||||| |||||||    
T  64592 atacatctccaaac 64579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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