View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_high_13 (Length: 380)
Name: NF10955_high_13
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_high_13 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 13889061 - 13889440
Alignment:
| Q |
1 |
tcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889061 |
tcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggcaagggagaaccattcaatgtttgatttcctccttcaatgcgca |
13889160 |
T |
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| Q |
101 |
aagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaacc |
200 |
Q |
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| T |
13889161 |
aagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaacc |
13889260 |
T |
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| Q |
201 |
attttcactcaacatagacaacttaaaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataatt |
300 |
Q |
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| T |
13889261 |
attttcactcaacatagacagtttaaaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataatt |
13889360 |
T |
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| Q |
301 |
gtagcttttgaaccagcttcaaactcatatttcatccccttccatgatgcaacacacacagacggatacatgttcccttc |
380 |
Q |
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| T |
13889361 |
gtagcttttgaaccagcttcaaactcatatttcatccccttccatgatgcaacacacacagacggatacatgttcccttc |
13889440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 14029186 - 14029565
Alignment:
| Q |
1 |
tcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029186 |
tcaaatgtactatctattgaagcgaaaagcacaaaacctggattaacttttaatggcaagggagaaccattcaatgtttgatttcctccttcaatgcgca |
14029285 |
T |
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| Q |
101 |
aagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaacc |
200 |
Q |
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| T |
14029286 |
aagagaagtttccagctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaacc |
14029385 |
T |
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| Q |
201 |
attttcactcaacatagacaacttaaaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataatt |
300 |
Q |
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| T |
14029386 |
attttcactcaacatagacagtttaaaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataatt |
14029485 |
T |
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| Q |
301 |
gtagcttttgaaccagcttcaaactcatatttcatccccttccatgatgcaacacacacagacggatacatgttcccttc |
380 |
Q |
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| T |
14029486 |
gtagcttttgaaccagcttcaaactcatatttcatccccttccatgatgcaacacacacagacggatacatgttcccttc |
14029565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 7690138 - 7690503
Alignment:
| Q |
15 |
tattgaagcgaaaagcacaaaacctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttcca |
114 |
Q |
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||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |
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| T |
7690138 |
tattgaagcaaatagcacaaaacctggattcacttttaatggtaagggagaaccattcaatgtttgatttcctccttctatgtgcatagagaagtttccg |
7690237 |
T |
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| Q |
115 |
gctttggtcacgacaaactcaatgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaaca |
214 |
Q |
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|||||||| | || ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||| ||||||| |
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| T |
7690238 |
gctttggttgctacgaactcaatgactatataatcaaactcattccaccccatgttagagatatcaggctcagttgcaatagagccattttcgctcaaca |
7690337 |
T |
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| Q |
215 |
tagacaacttaaaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataattgtagcttttgaacc |
314 |
Q |
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|||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7690338 |
tagataacttaaaatcaggcatatatgacacttgagtcgtctcagatatgccgtttccaaatgcatctttaaggagcaccataattgtagcttttgaacc |
7690437 |
T |
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| Q |
315 |
agcttcaaactcatatttcatccccttccatgatgcaacacacacagacggatacatgttcccttc |
380 |
Q |
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| T |
7690438 |
agcttcaaactcatatttcatccccttccatgatgcaacacacaccgatggatacatgttcccttc |
7690503 |
T |
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