View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_high_2 (Length: 637)
Name: NF10955_high_2
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 15 - 620
Target Start/End: Original strand, 50211964 - 50212569
Alignment:
| Q |
15 |
ggacatcaaaaggaagatcatcatggtggtacatagtggtgccccaaacaaactgtaatttggggtggctgttagaagttgttgccgccccagcagatcc |
114 |
Q |
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| T |
50211964 |
ggacatcaaaaggaagatcatcatggtggtacatagtggtgccccaaacaaactgtaatttggggtggctgttagaagttgttgccgccccagcagatcc |
50212063 |
T |
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| Q |
115 |
attagatggtaccaccacttgttgaagacgattgtttacagacctttcaacattcaactcttcgctacaagtttctttctgtgcataaacctgacaattt |
214 |
Q |
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| T |
50212064 |
attagatggtaccaccacttgttgaagacgattgtttacagacctttcaacattcaactcttcgctacaagtttctttctgtgcataaacctgacaattt |
50212163 |
T |
|
| Q |
215 |
cacattcactaattaatgaaccaaccctaaagattcttcaattatcacaaaatttggaaatttcatcaatctaaactagcttattaaacataattnnnnn |
314 |
Q |
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| T |
50212164 |
cacattcactaattaatgaaccaaccctaaagattcttcaattatcacaaaatttggaaatttcatcaatctaaactagcttattaaacataattaaaaa |
50212263 |
T |
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| Q |
315 |
nntgatactcaaatactaactgtatgagctccataagctttaactagagaaggaagaatatcttcaggtttgccatgttgaataagcaaattaagtcccc |
414 |
Q |
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| T |
50212264 |
aatgatactcaaatactaactgtatgagctccataagctttaactagagaaggaagaatatcttcaggtttgccatgttgaataagcaaattaagtcccc |
50212363 |
T |
|
| Q |
415 |
gtttcattagattcttcctcaagtcatccaaacattcaaggagaaattgtgttctcaatgctgcacaaggtcatgttcataaaggtgatgctatattata |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50212364 |
gtttcattagattcttcctcaagtcatccaaacattcaaggagaaattgtgttctcaatgctgcacaaggtcatgttcgtaaaggtgatgctatattata |
50212463 |
T |
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| Q |
515 |
ttgctactgcattaatcaaattcaaatccatagcaccaacaaaacaaacatagaagctnnnnnnnngctacaaaacactaacacattagattgaagatgt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50212464 |
ttgctactgcattaatcaaattcaaatccatagcaccaacaaaacaaacatagaagctaaaaaaaagctacaaaacactaacacattagattgaagatgt |
50212563 |
T |
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| Q |
615 |
attatt |
620 |
Q |
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| T |
50212564 |
attatt |
50212569 |
T |
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