View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_high_23 (Length: 266)
Name: NF10955_high_23
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 11887759 - 11887521
Alignment:
| Q |
19 |
atatactgatagcgagacttatttgattaaatagtagaaacttatctcttttatgcacgttggatttggacatattttagtgtatctatatacatatact |
118 |
Q |
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| T |
11887759 |
atatactgatagcgagacttattcgattaaatagtagaaacttatctcttttatgcacgttggatttgc-catattttaatgtatctatatacatatact |
11887661 |
T |
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| Q |
119 |
acagtaatttgtagtgtaagtttgactcgattttggtgttctaacttttctcacgttgcacttgcgcattgttttacgctttctctaacgtcc--nnnnn |
216 |
Q |
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| T |
11887660 |
atagtaatttgtagtgtaagtttgactcgattttggtgttctaacttttctcacgttgcacttgcgcattgttttacgctttctctaacgtcctattttt |
11887561 |
T |
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| Q |
217 |
nnnctccttccaaatccaatcgtttgctccctttgcttct |
256 |
Q |
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| T |
11887560 |
tttctccttccaaatccaatcgtttgctccctttgtttct |
11887521 |
T |
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