View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_high_4 (Length: 489)
Name: NF10955_high_4
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 52808982 - 52809428
Alignment:
| Q |
21 |
agaaatatggagcttagcaactgttttcgatttcctgtagctacttttaaattgatgatgtagaattaccaccttgtccttcacttgaaactatcatgac |
120 |
Q |
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| T |
52808982 |
agaaatatggagcttagcaactgtttccgatttcctgtagctacttttaaattgatgatgtagaattaccaccttgtccttcacttgaaactatcatgac |
52809081 |
T |
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| Q |
121 |
atg--gaggtatttgaccaacactttgaagcatacaccttcgtatatttcataatacacactccctccatgaatgaaagtgtatatgatacatttatttt |
218 |
Q |
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| T |
52809082 |
atggagaggtatttgaccaacactttgaagcatacaccttcgtatatttcataatatacactccctccatgaatgaaagtatatatgatacatttatttt |
52809181 |
T |
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| Q |
219 |
cagatgaaacctcttc-nnnnnnnnnnntagtatattttgtttttgggattattattctcctctcttgtaacttattgtggtgttaaaggttggtctttg |
317 |
Q |
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| T |
52809182 |
gagatgaaacctcttcaaaaaaaaaaaatagtatattttgtttttggga-tattattc-----------------ttgtggtgttaaaggttggtctttg |
52809263 |
T |
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| Q |
318 |
gatgccgacttaatt---ataacttgagcaacatcatcatccaactcctcttggtcaccttgaacattgatactcttgtaccacttagcacagaacaagt |
414 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52809264 |
gatgccgacttaattataataacttgagcatcatcatcatccaactcctcttggtcaccttgaacattgatactcttgtaccacttagcacagaacaagt |
52809363 |
T |
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| Q |
415 |
aaatcacaaaatcaaaaacaactagccctgctagaagaaagaaaaacctatccatgtgccctttg |
479 |
Q |
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| T |
52809364 |
aaatcacaaaatcaaaaacaactagccctgctagaagaaagaaaaacctatccatgtgccctttg |
52809428 |
T |
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