View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_12 (Length: 390)
Name: NF10955_low_12
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 53 - 371
Target Start/End: Complemental strand, 25771693 - 25771374
Alignment:
| Q |
53 |
aattgagttttctattggaattgagaagacacatttatgtgattgaggccagtttacaatcttaaattcaagttttgcaatgcaaataccgtgttctctg |
152 |
Q |
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| T |
25771693 |
aattgagttttctattggaattgagaagacacattcatgtgattgaggccagtttacaatcttaaattcaagttttgcaatgcaaataccgtgttctctg |
25771594 |
T |
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| Q |
153 |
ctatactttctcaattttaactaaattcnnnnnnn-ctcttggacagaaatttgttgctgctctagatcattgaactcgttgctaatgtgttgatgcaag |
251 |
Q |
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| T |
25771593 |
ctcttctttctcaattttaactaaattctttttttgctcttggacagaaatttgttgctgctctagatcattgaactcgttgctaatgtgttgatgcaag |
25771494 |
T |
|
| Q |
252 |
atggatgatcatttgttaagccgcctcaggttaccatcttcacaagtttatgcgactcacactgtcacccagttctcctcgaacagcaaagtgttaaact |
351 |
Q |
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| T |
25771493 |
atggatgatcatttgttaagccgcctcaggttaccatcttcacaagtttatgcgactcacactgtcacccaattctcctcgaacagcaaagtgttaaact |
25771394 |
T |
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| Q |
352 |
acggttccatgtgtttaagc |
371 |
Q |
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| T |
25771393 |
acggttccatgtgtttaagc |
25771374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 45301953 - 45302081
Alignment:
| Q |
112 |
tcttaaattcaagttttgcaatgcaaataccgtgttctctgctatactttctcaattttaactaaattc-nnnnnnnctcttggacagaaatttgttgct |
210 |
Q |
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| T |
45301953 |
tcttaaattcaagttttgcaatgcacataccttgtcctctgcttttcttgctcaattttcagtaatttctttttctgctctcggacagaaatttgttgtt |
45302052 |
T |
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| Q |
211 |
gctctagatcattgaactcgttgctaatg |
239 |
Q |
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| T |
45302053 |
gttctagatcatcaaactcgttgctaatg |
45302081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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