View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10955_low_14 (Length: 374)
Name: NF10955_low_14
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_14 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold0536 (3 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 58 - 374
Target Start/End: Complemental strand, 13448553 - 13448237
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13448553 |
tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtgg |
13448454 |
T |
|
| Q |
158 |
ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13448453 |
ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaa |
13448354 |
T |
|
| Q |
258 |
tgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcaga |
357 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13448353 |
tgagaaactgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcaga |
13448254 |
T |
|
| Q |
358 |
gatagcatagagaaggc |
374 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13448253 |
gatagcatagagaaggc |
13448237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 58 - 374
Target Start/End: Complemental strand, 13455024 - 13454708
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg |
157 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13455024 |
tggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgg |
13454925 |
T |
|
| Q |
158 |
ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaa |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
13454924 |
ggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaa |
13454825 |
T |
|
| Q |
258 |
tgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcaga |
357 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| | |
|
|
| T |
13454824 |
cgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaa |
13454725 |
T |
|
| Q |
358 |
gatagcatagagaaggc |
374 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13454724 |
gatagcatagagaaggc |
13454708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 58 - 374
Target Start/End: Complemental strand, 13440390 - 13440074
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg |
157 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13440390 |
tggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgg |
13440291 |
T |
|
| Q |
158 |
ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaa |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13440290 |
ggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaa |
13440191 |
T |
|
| Q |
258 |
tgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcaga |
357 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||| || |||||||||||||||| ||||||| |||||||| |
|
|
| T |
13440190 |
cgagaaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagg |
13440091 |
T |
|
| Q |
358 |
gatagcatagagaaggc |
374 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
13440090 |
gataacatagagaaggc |
13440074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 64 - 374
Target Start/End: Complemental strand, 12540869 - 12540559
Alignment:
| Q |
64 |
ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggat |
163 |
Q |
| |
|
|||||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
12540869 |
ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggat |
12540770 |
T |
|
| Q |
164 |
ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaa |
263 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||| || | ||| ||||| |
|
|
| T |
12540769 |
ttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaa |
12540670 |
T |
|
| Q |
264 |
acttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcagagatagc |
363 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||| | |||| || ||||||||||||||| || |||||||| || |
|
|
| T |
12540669 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggc |
12540570 |
T |
|
| Q |
364 |
atagagaaggc |
374 |
Q |
| |
|
||||||||||| |
|
|
| T |
12540569 |
atagagaaggc |
12540559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 67 - 374
Target Start/End: Complemental strand, 28385515 - 28385208
Alignment:
| Q |
67 |
aagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggattta |
166 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
28385515 |
aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc |
28385416 |
T |
|
| Q |
167 |
tgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaaact |
266 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||| | |||||||||||||||||||| ||||| ||||| |||||| ||| |||||||||| | |
|
|
| T |
28385415 |
tgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt |
28385316 |
T |
|
| Q |
267 |
tataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcagagatagcata |
366 |
Q |
| |
|
|||||| | ||||| |||||||||| ||||| |||| ||| ||||||||||| | |||| || ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
28385315 |
gataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacata |
28385216 |
T |
|
| Q |
367 |
gagaaggc |
374 |
Q |
| |
|
|||||||| |
|
|
| T |
28385215 |
gagaaggc |
28385208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 58 - 374
Target Start/End: Original strand, 3417516 - 3417832
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg |
157 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| || | |
|
|
| T |
3417516 |
tggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtag |
3417615 |
T |
|
| Q |
158 |
ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaa |
257 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| || ||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| | ||| |
|
|
| T |
3417616 |
ggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaa |
3417715 |
T |
|
| Q |
258 |
tgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcaga |
357 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||| || | |||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
3417716 |
tgagaaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcaga |
3417815 |
T |
|
| Q |
358 |
gatagcatagagaaggc |
374 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
3417816 |
gatgacatagagaaggc |
3417832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 374
Target Start/End: Complemental strand, 48965519 - 48965203
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg |
157 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || || |||||||||||||| |||||||||||||| || || ||| ||| |||||||||| || |||| |
|
|
| T |
48965519 |
tggttaccaaagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgg |
48965420 |
T |
|
| Q |
158 |
ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaa |
257 |
Q |
| |
|
| | |||||||| ||||| || ||||||| || || ||||||||| ||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
48965419 |
gtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaa |
48965320 |
T |
|
| Q |
258 |
tgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagttagtgagcaga |
357 |
Q |
| |
|
|| ||||| |||||| || | ||||| |||||||| ||||| |||||||||||||||||| || |||| ||| || ||| ||||| | ||||| || |
|
|
| T |
48965319 |
cgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagt |
48965220 |
T |
|
| Q |
358 |
gatagcatagagaaggc |
374 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48965219 |
gatagcatagagaaggc |
48965203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 318
Target Start/End: Complemental strand, 48958337 - 48958074
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgggaagaag---ggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag |
154 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || || |||||| ||||||||||||||||| ||||||||||||||| ||| |||||||| ||| | |
|
|
| T |
48958337 |
tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg |
48958238 |
T |
|
| Q |
155 |
tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
254 |
Q |
| |
|
|||| | ||||||||| ||||||||| ||||||| || || ||||||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
48958237 |
tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattcta |
48958138 |
T |
|
| Q |
255 |
caatgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgt |
318 |
Q |
| |
|
||||||||| | ||||| | | ||||||||||| || || || ||||||||||| |||||| |
|
|
| T |
48958137 |
caatgagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgt |
48958074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 318
Target Start/End: Complemental strand, 48961486 - 48961221
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcg---ggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag |
154 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || | |||||||||||||||||||| ||| |||||||||||||||| ||| || ||||| | || | |
|
|
| T |
48961486 |
tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcgg |
48961387 |
T |
|
| Q |
155 |
tggggggatttatgacgcattgcggggggaa--ctcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattc |
252 |
Q |
| |
|
|||| | |||||||||||||||||| |||| ||| ||| | ||||||| |||||| || | ||||||||||||||||| || |||||||| |||||| |
|
|
| T |
48961386 |
tgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattc |
48961287 |
T |
|
| Q |
253 |
tacaatgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgt |
318 |
Q |
| |
|
||||| ||||| | ||||| | | || || |||||| ||||||| |||||||||||||||||| |
|
|
| T |
48961286 |
tacaacgagaagttgataactgatgtgcggggtattggaattgaagttggtgcaacagaatggtgt |
48961221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 263
Target Start/End: Original strand, 48912331 - 48912539
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag |
154 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||||| |||||||| | |||| |||| ||||||||| ||||| |||| ||| |||||||| | || | |
|
|
| T |
48912331 |
tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg |
48912430 |
T |
|
| Q |
155 |
tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
254 |
Q |
| |
|
|||| | ||||||||| ||||| ||| |||| || || || ||||| |||||||| || ||||||||||| || |||||| | |||||||| || || || |
|
|
| T |
48912431 |
tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagtttta |
48912530 |
T |
|
| Q |
255 |
caatgagaa |
263 |
Q |
| |
|
||||||||| |
|
|
| T |
48912531 |
caatgagaa |
48912539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 263
Target Start/End: Complemental strand, 48974262 - 48974103
Alignment:
| Q |
104 |
tgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccgtagaggctgt |
203 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| || |||||||||| | || | ||| |||| ||||||||| ||||||| ||||| || || || |
|
|
| T |
48974262 |
tgatcataagggggtgggccccacaagtggtgattttaggccaccctgctatcggtgcattcttgacacattgcgggtggaactccaccgtggaagccgt |
48974163 |
T |
|
| Q |
204 |
tagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaa |
263 |
Q |
| |
|
|||||| || ||||||||||| || ||||| || |||| || ||||||||||| ||||| |
|
|
| T |
48974162 |
tagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaa |
48974103 |
T |
|
Back To:
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Target: scaffold0536 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 6497 - 6702
Alignment:
| Q |
58 |
tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag |
154 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||| || |
|
|
| T |
6497 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc |
6596 |
T |
|
| Q |
155 |
tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
254 |
Q |
| |
|
|||| | |||||||||||||| ||| |||| || || || |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |
|
|
| T |
6597 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaatttta |
6696 |
T |
|
| Q |
255 |
caatga |
260 |
Q |
| |
|
|||||| |
|
|
| T |
6697 |
caatga |
6702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 10517 - 10687
Alignment:
| Q |
93 |
gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc |
192 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| || |||| ||| | |||||| ||| ||||| | |||||||| ||||| ||| |||| || ||| |
|
|
| T |
10517 |
gaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccacc |
10616 |
T |
|
| Q |
193 |
gtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaa |
263 |
Q |
| |
|
|| ||||| |||||||| || ||||||||||| || ||||| | |||||||| ||||| ||||||||||| |
|
|
| T |
10617 |
gtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaa |
10687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 1580 - 1638
Alignment:
| Q |
196 |
gaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
254 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||| || ||| | ||||||||||| |
|
|
| T |
1580 |
gaggctgttagtgcaggaattccaatgatcacatggccagtacatagtgatcaattcta |
1638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 12641506 - 12641684
Alignment:
| Q |
94 |
aagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg |
193 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||| | ||| || |||||| |||| ||||| | ||| ||||||||||||||| |||||| | |
|
|
| T |
12641506 |
aagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtcgaactccttgg |
12641605 |
T |
|
| Q |
194 |
tagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaaacttataac |
272 |
Q |
| |
|
|||||||||||||||| || |||||||||| || ||||| || || ||||| || ||||| |||||||| || ||||| |
|
|
| T |
12641606 |
tagaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataac |
12641684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 12590196 - 12590336
Alignment:
| Q |
93 |
gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||| | |||||||| ||||| || |||| || | |
|
|
| T |
12590196 |
gaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtc |
12590295 |
T |
|
| Q |
193 |
gtagaggctgttagtgcgggagttccaatgataacatggcc |
233 |
Q |
| |
|
|| ||||| |||||||| ||| |||| ||||| |||||||| |
|
|
| T |
12590296 |
gtggaggcggttagtgctggaattccgatgatcacatggcc |
12590336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 318
Target Start/End: Original strand, 12483492 - 12483716
Alignment:
| Q |
94 |
aagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg |
193 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||| ||||| || ||| |||||||||||||||||||| | ||||||||| || || || |||| || | |
|
|
| T |
12483492 |
aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttg |
12483591 |
T |
|
| Q |
194 |
tagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaaacttataacacaattccgaggaattggagt |
293 |
Q |
| |
|
| || || |||||||| || |||||||||| || ||||||||||| || || || || |||||||||||||| ||||| | | ||||| ||||| || |
|
|
| T |
12483592 |
tggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgt |
12483691 |
T |
|
| Q |
294 |
tgaagtcggtgcaacagaatggtgt |
318 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
12483692 |
ggaagtcggtgcaacagagtggtgt |
12483716 |
T |
|
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