View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_15 (Length: 358)
Name: NF10955_low_15
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 49753665 - 49753308
Alignment:
| Q |
1 |
aaatgtatccagatagacaacaaggtggtggaggagcaccacacggtattcttctagcagtggtggtagctatagtggtcatagttccttttcttctcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753665 |
aaatgtatccagatagacaacaaggtggtggaggagcaccacacggtattcttctagcagtggtggtagctatagtggtcatagttccttttcttctcgg |
49753566 |
T |
|
| Q |
101 |
agatcaaggagaagccatcacagaagctatatcggagctactgagtccactcggtcttcttcttctaccaatcatccttcttctcacgattcagtttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753565 |
agatcaaggagaagccatcacagaagctatatcggagctactgagtccactcggtcttcttcttctaccaatcatccttcttctcacgattcagtttctc |
49753466 |
T |
|
| Q |
201 |
tcctctgaacgtggatctttcgtctccgccattttctccaccggtgaacctgatactattcatcgtgttagtggatcaccgttcggtgttgctctattcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753465 |
tcctctgaacgtggatctttcgtctccgccattttctccaccggtgaacctgatactattcatcgtgttagtggatcaccgttcggtgttgctctattcc |
49753366 |
T |
|
| Q |
301 |
ttgttctcattcttgtgcttttgtataaccgtttttcgatcttcggtggtgatgattc |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753365 |
ttgttctcattcttgtgcttttgtataaccgtttttcgatcttcggtggtgatgattc |
49753308 |
T |
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