View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_17 (Length: 348)
Name: NF10955_low_17
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 11822034 - 11821718
Alignment:
| Q |
17 |
aactataaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttccggc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11822034 |
aactataaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaattcccggc |
11821935 |
T |
|
| Q |
117 |
acggtgaggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821934 |
acggtgaggaaatggcgttgcatcggccggaatctcagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttc |
11821835 |
T |
|
| Q |
217 |
caaatcccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttaccgaatgtcgcggaattaagattcctatccaaaagactct |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
11821834 |
catatcccttccaaatcatcttttgaaatagctttctgaacataatcagatttcctcttaccgaaagccgcggaattaagattcctatccaaaagactct |
11821735 |
T |
|
| Q |
317 |
ccggtttcgcgcctttg |
333 |
Q |
| |
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|||||||||| |||||| |
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| T |
11821734 |
ccggtttcgcacctttg |
11821718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 11834330 - 11834637
Alignment:
| Q |
17 |
aactataaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttccggc |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| || |
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| T |
11834330 |
aactatgaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttccagc |
11834429 |
T |
|
| Q |
117 |
acggtgaggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
11834430 |
acggtgaggaaatggcgttgcatcggccggaatctcagcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttc |
11834529 |
T |
|
| Q |
217 |
caaatcccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttaccgaatgtcgcggaattaagattcctatccaaaagactct |
316 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||| || |
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| T |
11834530 |
catatcccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttacctaaacccgccgaattaacattcctatccaaaagattca |
11834629 |
T |
|
| Q |
317 |
ccggtttc |
324 |
Q |
| |
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|||||||| |
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| T |
11834630 |
ccggtttc |
11834637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 11918241 - 11918121
Alignment:
| Q |
155 |
ccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcccttccaaatcatcttttgaaatagctttctg |
254 |
Q |
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||||||||||||||||||| ||||||| | | || ||||| ||||||| ||||||||||||||||| ||||||||| | ||||| ||||| | || || |
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| T |
11918241 |
ccatttttccaccataaggattgaaaaacattacacctttttccaactcgatcatctttttccaaattccttccaaaccctctttagaaattggttcctt |
11918142 |
T |
|
| Q |
255 |
aacataatcagattttctctt |
275 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11918141 |
tacataatcagattttctctt |
11918121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 11947606 - 11947572
Alignment:
| Q |
197 |
ccaactcaatcatctttttccaaatcccttccaaa |
231 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
11947606 |
ccaacttaatcatctttttccaaatcccttccaaa |
11947572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 38126207 - 38126088
Alignment:
| Q |
156 |
catttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcccttccaaatcatcttttgaaatagctttctga |
255 |
Q |
| |
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|||||||||||| |||||||||||| ||||| ||||||||||| ||||||| ||| || | ||||||||||| ||||||||||||| | |||| |
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| T |
38126207 |
catttttccaccgtaagggttgaaagtcaatcctacttttcccaattcaatcagcttcttatatatcccttccaacccatcttttgaaattggattctcc |
38126108 |
T |
|
| Q |
256 |
acataatcagattttctctt |
275 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
38126107 |
acataatcagatttcctctt |
38126088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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