View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10955_low_18 (Length: 343)
Name: NF10955_low_18
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10955_low_18 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 17513075 - 17513390
Alignment:
| Q |
15 |
aagaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatttagaatgaaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17513075 |
aagaagatgttgataaattatgaataaaaagctatgcttaagataatttcactatccatgagtatgtttgggttaacaaaaaaaaatatttagaatgaaa |
17513174 |
T |
|
| Q |
114 |
gggttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaatatgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17513175 |
gggttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaatatgc |
17513274 |
T |
|
| Q |
214 |
tttaaagtagcaatttcatgattaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattctgttacggattttatgaattat |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
17513275 |
tttaaagtagcaatctcatgattaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattgtgttatggattttatgaattat |
17513374 |
T |
|
| Q |
314 |
attatacatgatattg |
329 |
Q |
| |
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|||||||||||||||| |
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| T |
17513375 |
attatacatgatattg |
17513390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 135 - 329
Target Start/End: Original strand, 17513693 - 17513887
Alignment:
| Q |
135 |
ttattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaatatgctttaaagtagcaatttcatga |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
17513693 |
ttattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaatatactttaaagtagaaatctcatga |
17513792 |
T |
|
| Q |
235 |
ttaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattctgttacggattttatgaattatattatacatgatattg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
17513793 |
ttaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattgtgttatggattttatgaattatattatacatgatattg |
17513887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 759 - 448
Alignment:
| Q |
16 |
agaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatttagaatgaaag |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | | | ||| ||||| |
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| T |
759 |
agaagatgttgataaattatgaataaaaagctatatttaagataatttcactatccatgagtatgtttgggttaacaattt----tttcttgaaggaaag |
664 |
T |
|
| Q |
115 |
ggttaaccattgctattttattattttttaaaatgaaa-ataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaatatgc |
213 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||| |||||||| |||||||||| |||||| |||| |||||||||||| |||||||||| ||||| |
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| T |
663 |
ggttaaccaatgctattttattattatttaaaataaaatataaggcactagaagtgaactaaattccatgctaaatatggtttgaaattagtgagtatgc |
564 |
T |
|
| Q |
214 |
tttaaagtagcaatttcatgattaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattctgttacggattttatgaattat |
313 |
Q |
| |
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|||| |||||||| |||||| || |||||||||||| ||||||||||||||||||| | ||||||||||||||| | ||||| | ||||| |||||||| |
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| T |
563 |
cttaaggtagcaatctcatgaataacaagtggaatttcaaaagatagtctctcaatttgagtgtgagataattgactatgttatgtattttgtgaattat |
464 |
T |
|
| Q |
314 |
attatacatgatattg |
329 |
Q |
| |
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|||||||||||||||| |
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|
| T |
463 |
attatacatgatattg |
448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 29361911 - 29362127
Alignment:
| Q |
16 |
agaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatt--tagaatgaa |
112 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
29361911 |
agaagatgttgataaattataagtaaaaggctatacttaagataatttcactatccatgagtatgtttgggttaaccaaaaaaaaaaaaaatagaatgaa |
29362010 |
T |
|
| Q |
113 |
aggg--ttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaata |
210 |
Q |
| |
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|||| ||||||| ||||||||||||| | |||||||| || |||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||| |
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| T |
29362011 |
agggggttaaccaatgctattttattaatatttaaaataaagataaggtattagaagtgaactaaattccatggcaaatatggtttaaaatcagtgaata |
29362110 |
T |
|
| Q |
211 |
tgctttaaagtagcaat |
227 |
Q |
| |
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||| ||||||||||||| |
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| T |
29362111 |
tgccttaaagtagcaat |
29362127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 11232649 - 11232517
Alignment:
| Q |
188 |
atatggtttaaaattagtgaatatgctttaaagtagcaatttcatgattaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattg |
287 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||| |||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
11232649 |
atatgatttaaaattagtgaatatgccttag-gtagcaatctcatgaataacaagtggaattttaaaagatggtctctcaattcgtgtgtgagataattg |
11232551 |
T |
|
| Q |
288 |
attctgttacggattttatgaattatattatacat |
322 |
Q |
| |
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||| ||||| ||||||||||||||||||||||||| |
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| T |
11232550 |
att-tgttatggattttatgaattatattatacat |
11232517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 34245935 - 34246125
Alignment:
| Q |
16 |
agaagatgttgataaattatgaataaaaagctatgcttaagata-tttcactatccatgagtatgtttgggttaacnnnnnnnnntatttagaatgaaag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||| ||| ||||| |
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|
| T |
34245935 |
agaagatgttgataaattatgaataaaaagctatgcttatgatagtttcactatccatgagtatgtttgggttaaccaattttttt-ttttgaaggaaag |
34246033 |
T |
|
| Q |
115 |
ggttaaccattgctattttattattttttaaaat-gaaaataaggcattag-aagtgaaataaatttcatggtaaatatggtttaaaattagt |
205 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||| |||||| |||||| ||| |||||||| |
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| T |
34246034 |
ggttaaccaatgctattttattattatttaaaataaaaaataaggcattagaaagtgaacgaaattccatggt-aatatgatttgaaattagt |
34246125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 1092772 - 1092682
Alignment:
| Q |
229 |
tcatgattaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattctgttacggattttatgaattatattata |
319 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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|
| T |
1092772 |
tcatgaataacaagtggaattttaaaagatagtctctcaatttgtgtgtgagataattgattgtgttatggattttatgaattatactata |
1092682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 34246276 - 34246390
Alignment:
| Q |
215 |
ttaaagtagcaatttcatgattaccaagtggaattttaaaagatagtctctcaattagtgtgtgagataattgattctgttacggattttatgaattata |
314 |
Q |
| |
|
|||| |||||||| |||||| || |||||||||||| ||||||||||||||||||| | ||||||||||||||| | ||||| | ||||| |||||| || |
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| T |
34246276 |
ttaaggtagcaatctcatgaataacaagtggaatttcaaaagatagtctctcaatttgagtgtgagataattgactatgttatgtattttgtgaattgta |
34246375 |
T |
|
| Q |
315 |
ttatacatgatattg |
329 |
Q |
| |
|
||||||||||||||| |
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|
| T |
34246376 |
ttatacatgatattg |
34246390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 1093404 - 1093308
Alignment:
| Q |
114 |
gggttaaccattgctattttattattttttaaaatgaaaataaggcattagaagtgaaataaatttcatggtaaatatggtttaaaattagtgaata |
210 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||||||||| |||| | ||||| ||| || ||||||||||||||||| ||||||||||||| |
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| T |
1093404 |
gggttaaccaatgctattttattattatttaaaataaaaataaggtattaaatgtgaactaagttccatggtaaatatggtttgaaattagtgaata |
1093308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 1093476 - 1093397
Alignment:
| Q |
11 |
agagaagaagatgttgataaattatgaataaaaagctatgcttaagat-atttcactatccatgagtatgtttgggttaac |
90 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| ||||||| |||| ||| |||||||| |||||||||||||| |
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| T |
1093476 |
agagtagaagatgttgataaat-atgaataaaaagctatgattaagataattttactttccatgagcatgtttgggttaac |
1093397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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