View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10955_low_21 (Length: 303)

Name: NF10955_low_21
Description: NF10955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10955_low_21
NF10955_low_21
[»] chr8 (2 HSPs)
chr8 (2-263)||(3385923-3386184)
chr8 (200-246)||(37466468-37466514)
[»] chr5 (1 HSPs)
chr5 (247-293)||(15807444-15807490)
[»] chr6 (3 HSPs)
chr6 (195-246)||(29734438-29734489)
chr6 (195-244)||(10401950-10401999)
chr6 (200-244)||(19680547-19680591)
[»] chr4 (7 HSPs)
chr4 (195-246)||(13483181-13483232)
chr4 (195-246)||(49649147-49649198)
chr4 (195-246)||(52353833-52353884)
chr4 (200-246)||(2472892-2472938)
chr4 (201-243)||(20943622-20943664)
chr4 (201-246)||(41534218-41534263)
chr4 (203-239)||(22593644-22593680)
[»] chr7 (3 HSPs)
chr7 (200-246)||(33316147-33316193)
chr7 (201-246)||(2443342-2443387)
chr7 (200-244)||(1694490-1694534)
[»] chr3 (2 HSPs)
chr3 (200-246)||(49492033-49492079)
chr3 (195-244)||(45301187-45301236)
[»] chr1 (1 HSPs)
chr1 (195-239)||(29823782-29823826)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 3385923 - 3386184
Alignment:
Q  2 taaagtaaaattgaaagtcgattgaaaccatacaatttcaaaaattaccaaacaccaatagaggggctactccatatagtaccgctcaaagttagaatat 101  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3385923 taaagtaaaattaaaagtccattgaaaccatacaatttcaaaaattaccaaacaccaatagaggggctactccatatagtaccgctcaaagttagaatat 3386022  T
Q  102 attgttaaatatgtttgtgg-ttctacaaatataccagctatttgtttcagttcttataaaaagtttcttcgatttttagtccttcnnnnnnnnttcaac 200  Q
    |||||||||||| | ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||        || |||    
T  3386023 attgttaaatatatatgtggtttttacaaatataccaactatttgtttcagttcttataaaaagtttcttcgatttttaatccttcaaaaaaattt-aac 3386121  T
Q  201 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattcaaatggtatggtaataca 263  Q
    ||||| |||| ||||| |||||||||||| ||||||||| |||| ||||| ||||| ||||||    
T  3386122 ttcacatttaatctctccttttaagtaaatttatatgtataatttaaatgatatggcaataca 3386184  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 37466514 - 37466468
Alignment:
Q  200 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||||||    
T  37466514 cttcactttttgtctctcctttaaagtaaactcatatgtaaaattca 37466468  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 15807490 - 15807444
Alignment:
Q  247 aatggtatggtaatacaccattactgatattggttatctgtgctcct 293  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  15807490 aatgttatggcaatacaccattactgatattggctatctgtgctcct 15807444  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 29734438 - 29734489
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||| ||||||    
T  29734438 ttcatcttcacttctagtctctcattttaagtaaacttatatgtagaattca 29734489  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 10401950 - 10401999
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 244  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||    
T  10401950 ttcagcttcacttttggtctcttctttaaagtaaactcatatgtataatt 10401999  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 19680547 - 19680591
Alignment:
Q  200 cttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 244  Q
    |||||||||| ||| || |||| ||||||||||||||||||||||    
T  19680547 cttcacttttggtccctcctttaaagtaaacttatatgtaaaatt 19680591  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 13483232 - 13483181
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||| ||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  13483232 ttcatcttcacttttgatctcttctttaaagtaaactcatatgtaaaattca 13483181  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 49649198 - 49649147
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  49649198 ttcatcttcacttttggtctcttctttaaagtaaactcatatgtataattca 49649147  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 52353833 - 52353884
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||    
T  52353833 ttcatcttcaattttagtctcttctttaaagtaaactcatatgtagaattca 52353884  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 2472938 - 2472892
Alignment:
Q  200 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||||||||| |||||| ||||||||||||||  |||||||||||||    
T  2472938 cttcacttttggtctctccttttaagtaaactagtatgtaaaattca 2472892  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 20943664 - 20943622
Alignment:
Q  201 ttcacttttagtctcttcttttaagtaaacttatatgtaaaat 243  Q
    ||||||||||||| || |||| |||||||||||||||||||||    
T  20943664 ttcacttttagtccctcctttaaagtaaacttatatgtaaaat 20943622  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 41534218 - 41534263
Alignment:
Q  201 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||| |||||||||||||||| ||||||||| |||| |||||||||    
T  41534218 ttcatttttagtctcttctttaaagtaaactaatatataaaattca 41534263  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 22593644 - 22593680
Alignment:
Q  203 cacttttagtctcttcttttaagtaaacttatatgta 239  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  22593644 cacttttagtctctacttttaagtaaacttatgtgta 22593680  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 33316147 - 33316193
Alignment:
Q  200 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  33316147 cttcacttttggtcacttctttaaagtaaactcatatgtaaaattca 33316193  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 2443342 - 2443387
Alignment:
Q  201 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    ||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  2443342 ttcacttttggtctcttctttaaagtaaactcatatgtagaattca 2443387  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 1694490 - 1694534
Alignment:
Q  200 cttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 244  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||    
T  1694490 cttcacttttggtctcttctttaaagtaaactcatatataaaatt 1694534  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 49492079 - 49492033
Alignment:
Q  200 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 246  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||||    
T  49492079 cttcacttttggtctcttcttttaagtaaactcatgtgtagaattca 49492033  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 45301236 - 45301187
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 244  Q
    |||| |||||||||||||||| ||||| ||||||||| |||| |||||||    
T  45301236 ttcatcttcacttttagtctcatctttaaagtaaactcatatttaaaatt 45301187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 29823826 - 29823782
Alignment:
Q  195 ttcaacttcacttttagtctcttcttttaagtaaacttatatgta 239  Q
    |||| |||||||||| |||||| |||||||||||||| |||||||    
T  29823826 ttcatcttcacttttggtctctccttttaagtaaactcatatgta 29823782  T

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